Hb_009158_040

Information

Type -
Description -
Location Contig9158: 55778-56131
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09900g
description POPTRDRAFT_664170; auxin-responsive family protein
nr
ID XP_012083129.1
description PREDICTED: auxin-induced protein 15A [Jatropha curcas]
swissprot
ID Q9ZUZ3
description Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana GN=SAUR32 PE=2 SV=1
trembl
ID B9I925
description Auxin-responsive family protein OS=Populus trichocarpa GN=POPTR_0014s09900g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62262: 55558-56420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009158_040 0.0 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
2 Hb_001053_120 0.0238698369 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
3 Hb_002170_030 0.0446624301 - - PREDICTED: laccase-4-like [Jatropha curcas]
4 Hb_026198_080 0.0454997001 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
5 Hb_023342_010 0.0460850625 - - -
6 Hb_006351_090 0.0565723644 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
7 Hb_001163_010 0.0598166596 - - PREDICTED: syncoilin [Jatropha curcas]
8 Hb_008705_080 0.0621424137 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
9 Hb_000023_100 0.0634752045 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
10 Hb_000580_200 0.0649060396 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
11 Hb_001097_170 0.0660000372 - - PREDICTED: protein NDR1 [Jatropha curcas]
12 Hb_000029_210 0.0746679214 - - protein binding protein, putative [Ricinus communis]
13 Hb_008518_060 0.0795106113 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
14 Hb_000416_020 0.0803317974 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000427_020 0.0807858194 - - PsbA, partial [Dianthus pygmaeus]
16 Hb_151290_010 0.0846596038 - - unnamed protein product [Vitis vinifera]
17 Hb_135887_010 0.0913390457 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
18 Hb_003906_080 0.0927633804 - - Peroxidase 66 precursor, putative [Ricinus communis]
19 Hb_003549_100 0.0940859129 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
20 Hb_000805_060 0.0943658488 - - laccase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009158_040 Hb_009158_040 Hb_001053_120 Hb_001053_120 Hb_009158_040--Hb_001053_120 Hb_002170_030 Hb_002170_030 Hb_009158_040--Hb_002170_030 Hb_026198_080 Hb_026198_080 Hb_009158_040--Hb_026198_080 Hb_023342_010 Hb_023342_010 Hb_009158_040--Hb_023342_010 Hb_006351_090 Hb_006351_090 Hb_009158_040--Hb_006351_090 Hb_001163_010 Hb_001163_010 Hb_009158_040--Hb_001163_010 Hb_001053_120--Hb_001163_010 Hb_001053_120--Hb_002170_030 Hb_001053_120--Hb_023342_010 Hb_000029_210 Hb_000029_210 Hb_001053_120--Hb_000029_210 Hb_001053_120--Hb_026198_080 Hb_002170_030--Hb_023342_010 Hb_002170_030--Hb_006351_090 Hb_008705_080 Hb_008705_080 Hb_002170_030--Hb_008705_080 Hb_002170_030--Hb_026198_080 Hb_026198_080--Hb_008705_080 Hb_026198_080--Hb_023342_010 Hb_002311_010 Hb_002311_010 Hb_026198_080--Hb_002311_010 Hb_000023_100 Hb_000023_100 Hb_023342_010--Hb_000023_100 Hb_023342_010--Hb_000029_210 Hb_003906_080 Hb_003906_080 Hb_006351_090--Hb_003906_080 Hb_006351_090--Hb_008705_080 Hb_006351_090--Hb_001053_120 Hb_006351_090--Hb_023342_010 Hb_001163_010--Hb_000029_210 Hb_008518_060 Hb_008518_060 Hb_001163_010--Hb_008518_060 Hb_000427_020 Hb_000427_020 Hb_001163_010--Hb_000427_020 Hb_001163_010--Hb_002170_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107039 1.52736 11.754 86.0884 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0885774 109.978

CAGE analysis