Hb_009175_020

Information

Type -
Description -
Location Contig9175: 2415-10579
Sequence    

Annotation

kegg
ID vvi:100250499
description pentatricopeptide repeat-containing protein At5g14770, mitochondrial
nr
ID XP_004303401.2
description PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
swissprot
ID Q9SKU6
description Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1
trembl
ID A0A067JGJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03056 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62294: 2290-4512 , PASA_asmbl_62295: 5221-5721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009175_020 0.0 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
2 Hb_009486_180 0.0538178608 - - unknown [Glycine max]
3 Hb_002329_040 0.0566455061 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
4 Hb_000190_120 0.0598146688 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
5 Hb_000429_220 0.0599868804 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
6 Hb_123903_010 0.0602956524 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
7 Hb_002107_070 0.0603081203 - - hypothetical protein RCOM_1598630 [Ricinus communis]
8 Hb_001195_320 0.0612097562 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
9 Hb_104061_020 0.0627010834 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
10 Hb_009545_100 0.0632314736 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
11 Hb_001062_010 0.0646139139 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
12 Hb_000900_030 0.0646454162 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
13 Hb_012395_140 0.0646522791 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
14 Hb_002823_030 0.0653580468 - - -
15 Hb_001343_040 0.0661604518 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
16 Hb_004453_110 0.0668529299 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
17 Hb_007635_030 0.0670389127 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
18 Hb_000975_040 0.0671770182 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
19 Hb_003952_150 0.067421691 - - PREDICTED: cactin [Jatropha curcas]
20 Hb_000183_020 0.0702621963 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009175_020 Hb_009175_020 Hb_009486_180 Hb_009486_180 Hb_009175_020--Hb_009486_180 Hb_002329_040 Hb_002329_040 Hb_009175_020--Hb_002329_040 Hb_000190_120 Hb_000190_120 Hb_009175_020--Hb_000190_120 Hb_000429_220 Hb_000429_220 Hb_009175_020--Hb_000429_220 Hb_123903_010 Hb_123903_010 Hb_009175_020--Hb_123903_010 Hb_002107_070 Hb_002107_070 Hb_009175_020--Hb_002107_070 Hb_001178_070 Hb_001178_070 Hb_009486_180--Hb_001178_070 Hb_000900_030 Hb_000900_030 Hb_009486_180--Hb_000900_030 Hb_000011_230 Hb_000011_230 Hb_009486_180--Hb_000011_230 Hb_002311_290 Hb_002311_290 Hb_009486_180--Hb_002311_290 Hb_001062_010 Hb_001062_010 Hb_009486_180--Hb_001062_010 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_000740_100 Hb_000740_100 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_001195_320 Hb_001195_320 Hb_002329_040--Hb_001195_320 Hb_000183_020 Hb_000183_020 Hb_002329_040--Hb_000183_020 Hb_007576_110 Hb_007576_110 Hb_000190_120--Hb_007576_110 Hb_002823_030 Hb_002823_030 Hb_000190_120--Hb_002823_030 Hb_003371_110 Hb_003371_110 Hb_000190_120--Hb_003371_110 Hb_000347_070 Hb_000347_070 Hb_000190_120--Hb_000347_070 Hb_003680_150 Hb_003680_150 Hb_000190_120--Hb_003680_150 Hb_004453_110 Hb_004453_110 Hb_000429_220--Hb_004453_110 Hb_089140_050 Hb_089140_050 Hb_000429_220--Hb_089140_050 Hb_009503_030 Hb_009503_030 Hb_000429_220--Hb_009503_030 Hb_000429_220--Hb_027380_140 Hb_000429_220--Hb_002823_030 Hb_143629_110 Hb_143629_110 Hb_123903_010--Hb_143629_110 Hb_002815_030 Hb_002815_030 Hb_123903_010--Hb_002815_030 Hb_000975_040 Hb_000975_040 Hb_123903_010--Hb_000975_040 Hb_000390_320 Hb_000390_320 Hb_123903_010--Hb_000390_320 Hb_032202_200 Hb_032202_200 Hb_123903_010--Hb_032202_200 Hb_104061_020 Hb_104061_020 Hb_002107_070--Hb_104061_020 Hb_000369_130 Hb_000369_130 Hb_002107_070--Hb_000369_130 Hb_001821_090 Hb_001821_090 Hb_002107_070--Hb_001821_090 Hb_028487_010 Hb_028487_010 Hb_002107_070--Hb_028487_010 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.61683 4.29947 2.43341 3.45852 6.07775 5.48603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75317 3.26514 3.04064 5.1327 4.10948

CAGE analysis