Hb_009178_050

Information

Type -
Description -
Location Contig9178: 18897-19079
Sequence    

Annotation

kegg
ID rcu:RCOM_0204860
description Elongation factor 1-alpha, putative (EC:2.7.7.4)
nr
ID XP_002527965.1
description Elongation factor 1-alpha, putative [Ricinus communis]
swissprot
ID Q96WZ1
description Elongation factor 1-alpha OS=Coccidioides immitis (strain RS) GN=TEF PE=2 SV=2
trembl
ID B9SPP6
description Elongation factor 1-alpha, putative OS=Ricinus communis GN=RCOM_0204860 PE=4 SV=1
Gene Ontology
ID GO:0003743
description hbs1-like protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009178_050 0.0 - - Elongation factor 1-alpha, putative [Ricinus communis]
2 Hb_001277_060 0.1527008108 - - ADP-ribosylation factor-like protein 5 [Morus notabilis]
3 Hb_001248_120 0.2332273192 - - conserved hypothetical protein [Ricinus communis]
4 Hb_078804_010 0.2360068416 - - kinase, putative [Ricinus communis]
5 Hb_000179_120 0.2643762693 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
6 Hb_000345_060 0.2652163485 - - PREDICTED: REF/SRPP-like protein At3g05500 [Jatropha curcas]
7 Hb_000614_310 0.2707036524 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002192_040 0.2751039473 - - -
9 Hb_001514_260 0.2850226098 - - -
10 Hb_007120_040 0.2869387409 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000358_130 0.2887156376 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
12 Hb_033153_080 0.2908874585 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
13 Hb_000577_060 0.2930582186 - - -
14 Hb_000753_270 0.3011605861 - - -
15 Hb_001157_210 0.3041568323 - - hypothetical protein CISIN_1g038260mg [Citrus sinensis]
16 Hb_000243_370 0.3052625937 - - hypothetical protein VITISV_010022 [Vitis vinifera]
17 Hb_003540_180 0.3105311581 - - -
18 Hb_000160_050 0.3113387987 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
19 Hb_000069_290 0.3145774449 - - hypothetical protein POPTR_0014s09500g [Populus trichocarpa]
20 Hb_094529_020 0.3148456155 - - leucine-rich repeat containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009178_050 Hb_009178_050 Hb_001277_060 Hb_001277_060 Hb_009178_050--Hb_001277_060 Hb_001248_120 Hb_001248_120 Hb_009178_050--Hb_001248_120 Hb_078804_010 Hb_078804_010 Hb_009178_050--Hb_078804_010 Hb_000179_120 Hb_000179_120 Hb_009178_050--Hb_000179_120 Hb_000345_060 Hb_000345_060 Hb_009178_050--Hb_000345_060 Hb_000614_310 Hb_000614_310 Hb_009178_050--Hb_000614_310 Hb_001277_060--Hb_078804_010 Hb_001277_060--Hb_000614_310 Hb_001277_060--Hb_001248_120 Hb_033153_080 Hb_033153_080 Hb_001277_060--Hb_033153_080 Hb_001514_260 Hb_001514_260 Hb_001277_060--Hb_001514_260 Hb_094529_020 Hb_094529_020 Hb_001248_120--Hb_094529_020 Hb_005529_020 Hb_005529_020 Hb_001248_120--Hb_005529_020 Hb_001195_670 Hb_001195_670 Hb_001248_120--Hb_001195_670 Hb_000160_050 Hb_000160_050 Hb_001248_120--Hb_000160_050 Hb_003411_120 Hb_003411_120 Hb_001248_120--Hb_003411_120 Hb_000450_170 Hb_000450_170 Hb_001248_120--Hb_000450_170 Hb_001633_190 Hb_001633_190 Hb_078804_010--Hb_001633_190 Hb_078804_010--Hb_000614_310 Hb_001864_090 Hb_001864_090 Hb_078804_010--Hb_001864_090 Hb_000946_160 Hb_000946_160 Hb_078804_010--Hb_000946_160 Hb_000217_010 Hb_000217_010 Hb_000179_120--Hb_000217_010 Hb_034299_070 Hb_034299_070 Hb_000179_120--Hb_034299_070 Hb_000179_120--Hb_000345_060 Hb_000483_400 Hb_000483_400 Hb_000179_120--Hb_000483_400 Hb_002572_030 Hb_002572_030 Hb_000179_120--Hb_002572_030 Hb_023301_010 Hb_023301_010 Hb_000179_120--Hb_023301_010 Hb_003906_020 Hb_003906_020 Hb_000345_060--Hb_003906_020 Hb_001635_010 Hb_001635_010 Hb_000345_060--Hb_001635_010 Hb_001157_210 Hb_001157_210 Hb_000345_060--Hb_001157_210 Hb_014720_100 Hb_014720_100 Hb_000345_060--Hb_014720_100 Hb_000367_110 Hb_000367_110 Hb_000345_060--Hb_000367_110 Hb_000753_270 Hb_000753_270 Hb_000614_310--Hb_000753_270 Hb_000069_290 Hb_000069_290 Hb_000614_310--Hb_000069_290 Hb_000577_060 Hb_000577_060 Hb_000614_310--Hb_000577_060 Hb_000170_180 Hb_000170_180 Hb_000614_310--Hb_000170_180 Hb_054581_010 Hb_054581_010 Hb_000614_310--Hb_054581_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 63.8712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.15824 7.51662 3.92626 2.50838 0

CAGE analysis