Hb_009189_020

Information

Type -
Description -
Location Contig9189: 15029-16426
Sequence    

Annotation

kegg
ID rcu:RCOM_0849590
description hypothetical protein
nr
ID XP_012089750.1
description PREDICTED: CASP-like protein 4B4 [Jatropha curcas]
swissprot
ID D7LBN4
description CASP-like protein 4B1 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_321547 PE=3 SV=1
trembl
ID A0A067JTF2
description CASP-like protein OS=Jatropha curcas GN=JCGZ_00401 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 4b1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62315: 14959-15988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009189_020 0.0 - - PREDICTED: CASP-like protein 4B4 [Jatropha curcas]
2 Hb_004374_130 0.1200407371 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
3 Hb_004466_040 0.1332851555 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
4 Hb_083628_010 0.1425527845 - - PREDICTED: probable serine protease EDA2 [Jatropha curcas]
5 Hb_086022_010 0.1428373204 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
6 Hb_009222_070 0.1497647613 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
7 Hb_000608_110 0.1517047376 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
8 Hb_001623_110 0.1562290016 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
9 Hb_162060_010 0.1590501272 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001349_030 0.1619757191 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
11 Hb_000002_480 0.1631016033 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
12 Hb_024074_020 0.164483877 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
13 Hb_000991_040 0.166004722 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
14 Hb_002046_150 0.1675406223 - - PREDICTED: probable receptor-like protein kinase At5g15080 [Jatropha curcas]
15 Hb_000805_210 0.1679368182 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
16 Hb_003097_120 0.1689068108 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
17 Hb_008054_050 0.1694279218 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
18 Hb_000890_230 0.1694396623 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
19 Hb_005535_080 0.1696579562 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
20 Hb_000637_140 0.1717341879 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_009189_020 Hb_009189_020 Hb_004374_130 Hb_004374_130 Hb_009189_020--Hb_004374_130 Hb_004466_040 Hb_004466_040 Hb_009189_020--Hb_004466_040 Hb_083628_010 Hb_083628_010 Hb_009189_020--Hb_083628_010 Hb_086022_010 Hb_086022_010 Hb_009189_020--Hb_086022_010 Hb_009222_070 Hb_009222_070 Hb_009189_020--Hb_009222_070 Hb_000608_110 Hb_000608_110 Hb_009189_020--Hb_000608_110 Hb_009393_200 Hb_009393_200 Hb_004374_130--Hb_009393_200 Hb_008054_050 Hb_008054_050 Hb_004374_130--Hb_008054_050 Hb_004374_130--Hb_009222_070 Hb_145317_010 Hb_145317_010 Hb_004374_130--Hb_145317_010 Hb_004374_130--Hb_083628_010 Hb_012322_020 Hb_012322_020 Hb_004466_040--Hb_012322_020 Hb_004466_040--Hb_086022_010 Hb_000103_310 Hb_000103_310 Hb_004466_040--Hb_000103_310 Hb_004466_040--Hb_000608_110 Hb_000696_010 Hb_000696_010 Hb_004466_040--Hb_000696_010 Hb_001124_020 Hb_001124_020 Hb_004466_040--Hb_001124_020 Hb_000805_210 Hb_000805_210 Hb_083628_010--Hb_000805_210 Hb_164945_010 Hb_164945_010 Hb_083628_010--Hb_164945_010 Hb_001623_110 Hb_001623_110 Hb_083628_010--Hb_001623_110 Hb_000836_300 Hb_000836_300 Hb_083628_010--Hb_000836_300 Hb_012760_030 Hb_012760_030 Hb_083628_010--Hb_012760_030 Hb_083628_010--Hb_009222_070 Hb_002217_380 Hb_002217_380 Hb_086022_010--Hb_002217_380 Hb_086022_010--Hb_000608_110 Hb_000556_150 Hb_000556_150 Hb_086022_010--Hb_000556_150 Hb_008511_060 Hb_008511_060 Hb_086022_010--Hb_008511_060 Hb_007951_040 Hb_007951_040 Hb_086022_010--Hb_007951_040 Hb_009222_070--Hb_000805_210 Hb_009222_070--Hb_009393_200 Hb_002615_070 Hb_002615_070 Hb_009222_070--Hb_002615_070 Hb_009222_070--Hb_001623_110 Hb_009247_010 Hb_009247_010 Hb_009222_070--Hb_009247_010 Hb_001501_080 Hb_001501_080 Hb_000608_110--Hb_001501_080 Hb_000751_030 Hb_000751_030 Hb_000608_110--Hb_000751_030 Hb_000494_080 Hb_000494_080 Hb_000608_110--Hb_000494_080 Hb_000608_110--Hb_007951_040 Hb_000760_020 Hb_000760_020 Hb_000608_110--Hb_000760_020 Hb_000096_120 Hb_000096_120 Hb_000608_110--Hb_000096_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26775 3.43757 4.91759 11.1817 6.17958 2.68576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93387 2.51166 1.17562 1.0232 2.08431

CAGE analysis