Hb_009193_010

Information

Type -
Description -
Location Contig9193: 5807-8848
Sequence    

Annotation

kegg
ID vvi:100242217
description PLASMODESMATA CALLOSE-BINDING PROTEIN 3
nr
ID XP_012067766.1
description PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
swissprot
ID Q9FZ86
description PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana GN=PDCB3 PE=1 SV=1
trembl
ID A0A067KYM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15703 PE=4 SV=1
Gene Ontology
ID GO:0004673
description plasmodesmata callose-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62319: 6572-8808 , PASA_asmbl_62320: 6848-8677 , PASA_asmbl_62321: 8145-8545
cDNA
(Sanger)
(ID:Location)		 001_J22.ab1: 6572-8472 , 007_G09.ab1: 6572-8444 , 010_E22.ab1: 8450-8675 , 012_O17.ab1: 6610-8391 , 025_K12.ab1: 6610-8451 , 030_K04.ab1: 6572-8403 , 035_G10.ab1: 6572-8450 , 044_P13.ab1: 6576-8153

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009193_010 0.0 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
2 Hb_000066_040 0.0762024919 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
3 Hb_001821_060 0.0841647749 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
4 Hb_000256_160 0.0958640705 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
5 Hb_000510_190 0.1020955484 - - glutathione reductase [Hevea brasiliensis]
6 Hb_000414_080 0.1024085912 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
7 Hb_000997_290 0.1083865168 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
8 Hb_000445_370 0.1087972842 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
9 Hb_009296_020 0.1090005298 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
10 Hb_007317_020 0.1112918532 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
11 Hb_011174_080 0.1119360834 - - PREDICTED: sulfite oxidase [Jatropha curcas]
12 Hb_000157_140 0.113845246 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_000120_740 0.116378997 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
14 Hb_004129_010 0.1176736249 - - aspartate aminotransferase, putative [Ricinus communis]
15 Hb_001124_140 0.1204084265 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
16 Hb_002010_090 0.1205939515 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
17 Hb_005854_040 0.1210160998 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001235_130 0.1227873875 - - -
19 Hb_035834_010 0.1231868269 - - zinc finger protein, putative [Ricinus communis]
20 Hb_013968_010 0.1233023497 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]

Gene co-expression network

sample Hb_009193_010 Hb_009193_010 Hb_000066_040 Hb_000066_040 Hb_009193_010--Hb_000066_040 Hb_001821_060 Hb_001821_060 Hb_009193_010--Hb_001821_060 Hb_000256_160 Hb_000256_160 Hb_009193_010--Hb_000256_160 Hb_000510_190 Hb_000510_190 Hb_009193_010--Hb_000510_190 Hb_000414_080 Hb_000414_080 Hb_009193_010--Hb_000414_080 Hb_000997_290 Hb_000997_290 Hb_009193_010--Hb_000997_290 Hb_002805_090 Hb_002805_090 Hb_000066_040--Hb_002805_090 Hb_001109_160 Hb_001109_160 Hb_000066_040--Hb_001109_160 Hb_000665_200 Hb_000665_200 Hb_000066_040--Hb_000665_200 Hb_000025_500 Hb_000025_500 Hb_000066_040--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_000066_040--Hb_004041_030 Hb_012033_010 Hb_012033_010 Hb_001821_060--Hb_012033_010 Hb_013968_010 Hb_013968_010 Hb_001821_060--Hb_013968_010 Hb_001821_060--Hb_000256_160 Hb_025045_010 Hb_025045_010 Hb_001821_060--Hb_025045_010 Hb_003226_090 Hb_003226_090 Hb_001821_060--Hb_003226_090 Hb_001235_130 Hb_001235_130 Hb_000256_160--Hb_001235_130 Hb_000256_160--Hb_003226_090 Hb_000094_150 Hb_000094_150 Hb_000256_160--Hb_000094_150 Hb_004129_010 Hb_004129_010 Hb_000256_160--Hb_004129_010 Hb_005588_120 Hb_005588_120 Hb_000256_160--Hb_005588_120 Hb_002010_090 Hb_002010_090 Hb_000256_160--Hb_002010_090 Hb_000487_370 Hb_000487_370 Hb_000510_190--Hb_000487_370 Hb_000510_190--Hb_000414_080 Hb_002828_060 Hb_002828_060 Hb_000510_190--Hb_002828_060 Hb_002249_080 Hb_002249_080 Hb_000510_190--Hb_002249_080 Hb_009296_020 Hb_009296_020 Hb_000510_190--Hb_009296_020 Hb_003490_060 Hb_003490_060 Hb_000510_190--Hb_003490_060 Hb_000414_080--Hb_000487_370 Hb_000414_080--Hb_002249_080 Hb_000422_080 Hb_000422_080 Hb_000414_080--Hb_000422_080 Hb_003175_070 Hb_003175_070 Hb_000414_080--Hb_003175_070 Hb_002374_450 Hb_002374_450 Hb_000414_080--Hb_002374_450 Hb_001195_370 Hb_001195_370 Hb_000997_290--Hb_001195_370 Hb_000329_080 Hb_000329_080 Hb_000997_290--Hb_000329_080 Hb_000997_290--Hb_000066_040 Hb_001425_010 Hb_001425_010 Hb_000997_290--Hb_001425_010 Hb_011174_080 Hb_011174_080 Hb_000997_290--Hb_011174_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.71537 58.8275 92.9341 95.054 21.1909 13.143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6441 9.32527 15.1315 82.8861 136.641

CAGE analysis