Hb_009193_030

Information

Type -
Description -
Location Contig9193: 15499-19863
Sequence    

Annotation

kegg
ID pop:POPTR_0010s16620g
description POPTRDRAFT_226137; band 7 family protein
nr
ID XP_006378572.1
description hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
swissprot
ID Q5R7C5
description Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1
trembl
ID U5G1X9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s16620g PE=4 SV=1
Gene Ontology
ID GO:0005730
description band 7 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62324: 15438-19782 , PASA_asmbl_62325: 15987-16154
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009193_030 0.0 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
2 Hb_019654_030 0.0794024396 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
3 Hb_000521_130 0.097219787 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
4 Hb_002284_230 0.0976013478 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
5 Hb_001390_130 0.0980409958 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
6 Hb_000922_390 0.1006204001 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
7 Hb_000820_090 0.1016468072 - - -
8 Hb_017131_010 0.1027238647 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
9 Hb_006162_010 0.1041901604 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
10 Hb_004672_010 0.1059454545 - - ecotropic viral integration site, putative [Ricinus communis]
11 Hb_003697_050 0.1059983359 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
12 Hb_002631_010 0.1082195994 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
13 Hb_000291_080 0.1098550504 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
14 Hb_148113_010 0.1099942901 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17C-like isoform X3 [Citrus sinensis]
15 Hb_000538_070 0.112546102 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
16 Hb_000212_450 0.1125788732 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
17 Hb_000046_350 0.1130377337 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000028_350 0.1161068486 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
19 Hb_000130_050 0.1167796632 - - 14-3-3 protein, putative [Ricinus communis]
20 Hb_000363_360 0.1177918121 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]

Gene co-expression network

sample Hb_009193_030 Hb_009193_030 Hb_019654_030 Hb_019654_030 Hb_009193_030--Hb_019654_030 Hb_000521_130 Hb_000521_130 Hb_009193_030--Hb_000521_130 Hb_002284_230 Hb_002284_230 Hb_009193_030--Hb_002284_230 Hb_001390_130 Hb_001390_130 Hb_009193_030--Hb_001390_130 Hb_000922_390 Hb_000922_390 Hb_009193_030--Hb_000922_390 Hb_000820_090 Hb_000820_090 Hb_009193_030--Hb_000820_090 Hb_000363_360 Hb_000363_360 Hb_019654_030--Hb_000363_360 Hb_005306_180 Hb_005306_180 Hb_019654_030--Hb_005306_180 Hb_019654_030--Hb_002284_230 Hb_003633_050 Hb_003633_050 Hb_019654_030--Hb_003633_050 Hb_000291_080 Hb_000291_080 Hb_019654_030--Hb_000291_080 Hb_000212_450 Hb_000212_450 Hb_000521_130--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000521_130--Hb_000252_100 Hb_000140_380 Hb_000140_380 Hb_000521_130--Hb_000140_380 Hb_004800_100 Hb_004800_100 Hb_000521_130--Hb_004800_100 Hb_017131_010 Hb_017131_010 Hb_000521_130--Hb_017131_010 Hb_000173_410 Hb_000173_410 Hb_000521_130--Hb_000173_410 Hb_003697_050 Hb_003697_050 Hb_002284_230--Hb_003697_050 Hb_000046_350 Hb_000046_350 Hb_002284_230--Hb_000046_350 Hb_025098_010 Hb_025098_010 Hb_002284_230--Hb_025098_010 Hb_002284_230--Hb_003633_050 Hb_003126_070 Hb_003126_070 Hb_002284_230--Hb_003126_070 Hb_001390_130--Hb_000291_080 Hb_002111_040 Hb_002111_040 Hb_001390_130--Hb_002111_040 Hb_003697_040 Hb_003697_040 Hb_001390_130--Hb_003697_040 Hb_005488_200 Hb_005488_200 Hb_001390_130--Hb_005488_200 Hb_007416_060 Hb_007416_060 Hb_001390_130--Hb_007416_060 Hb_000538_070 Hb_000538_070 Hb_001390_130--Hb_000538_070 Hb_011671_450 Hb_011671_450 Hb_000922_390--Hb_011671_450 Hb_001811_030 Hb_001811_030 Hb_000922_390--Hb_001811_030 Hb_093458_050 Hb_093458_050 Hb_000922_390--Hb_093458_050 Hb_002600_040 Hb_002600_040 Hb_000922_390--Hb_002600_040 Hb_000922_390--Hb_000820_090 Hb_000820_090--Hb_000291_080 Hb_000820_090--Hb_005488_200 Hb_008232_010 Hb_008232_010 Hb_000820_090--Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_000820_090--Hb_000982_080 Hb_000820_090--Hb_002111_040 Hb_004672_010 Hb_004672_010 Hb_000820_090--Hb_004672_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2753 7.65496 10.3555 42.6167 13.4827 23.2281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.0023 31.4368 54.9244 34.5428 16.6959

CAGE analysis