Hb_009193_070

Information

Type -
Description -
Location Contig9193: 50719-56235
Sequence    

Annotation

kegg
ID -
description -
nr
ID AAM64564.1
description fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
swissprot
ID -
description -
trembl
ID F4IE73
description Ureide permease 5 OS=Arabidopsis thaliana GN=UPS5 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62332: 54180-54732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009193_070 0.0 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
2 Hb_003925_120 0.0502442039 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_008847_050 0.052345018 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001007_070 0.0536914055 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
5 Hb_028491_010 0.059393486 - - hypothetical protein JCGZ_12857 [Jatropha curcas]
6 Hb_006291_050 0.0607397382 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_001999_230 0.0612886199 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
8 Hb_131466_010 0.0629268162 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
9 Hb_001141_100 0.0653050864 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
10 Hb_005111_040 0.06597917 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
11 Hb_004607_110 0.0669014211 - - PREDICTED: serine/threonine-protein kinase Nek6 [Jatropha curcas]
12 Hb_000329_430 0.0696907 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]
13 Hb_002259_090 0.0699680778 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
14 Hb_004338_050 0.0733876739 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
15 Hb_029991_010 0.0757017885 - - hypothetical protein PRUPE_ppa001615mg [Prunus persica]
16 Hb_005054_120 0.0769770604 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
17 Hb_001277_130 0.0781147726 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
18 Hb_000099_120 0.0783696253 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
19 Hb_000098_040 0.0788065762 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
20 Hb_001564_120 0.0802596847 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]

Gene co-expression network

sample Hb_009193_070 Hb_009193_070 Hb_003925_120 Hb_003925_120 Hb_009193_070--Hb_003925_120 Hb_008847_050 Hb_008847_050 Hb_009193_070--Hb_008847_050 Hb_001007_070 Hb_001007_070 Hb_009193_070--Hb_001007_070 Hb_028491_010 Hb_028491_010 Hb_009193_070--Hb_028491_010 Hb_006291_050 Hb_006291_050 Hb_009193_070--Hb_006291_050 Hb_001999_230 Hb_001999_230 Hb_009193_070--Hb_001999_230 Hb_000329_430 Hb_000329_430 Hb_003925_120--Hb_000329_430 Hb_003925_120--Hb_008847_050 Hb_001141_100 Hb_001141_100 Hb_003925_120--Hb_001141_100 Hb_003925_120--Hb_028491_010 Hb_006615_090 Hb_006615_090 Hb_003925_120--Hb_006615_090 Hb_002259_090 Hb_002259_090 Hb_008847_050--Hb_002259_090 Hb_008847_050--Hb_001141_100 Hb_001277_130 Hb_001277_130 Hb_008847_050--Hb_001277_130 Hb_008847_050--Hb_028491_010 Hb_003025_160 Hb_003025_160 Hb_008847_050--Hb_003025_160 Hb_001007_070--Hb_001999_230 Hb_000099_120 Hb_000099_120 Hb_001007_070--Hb_000099_120 Hb_005054_120 Hb_005054_120 Hb_001007_070--Hb_005054_120 Hb_001007_070--Hb_002259_090 Hb_000254_130 Hb_000254_130 Hb_001007_070--Hb_000254_130 Hb_004607_110 Hb_004607_110 Hb_028491_010--Hb_004607_110 Hb_028491_010--Hb_001141_100 Hb_029991_010 Hb_029991_010 Hb_028491_010--Hb_029991_010 Hb_028491_010--Hb_001277_130 Hb_147028_010 Hb_147028_010 Hb_028491_010--Hb_147028_010 Hb_005111_040 Hb_005111_040 Hb_006291_050--Hb_005111_040 Hb_131466_010 Hb_131466_010 Hb_006291_050--Hb_131466_010 Hb_002042_210 Hb_002042_210 Hb_006291_050--Hb_002042_210 Hb_006573_240 Hb_006573_240 Hb_006291_050--Hb_006573_240 Hb_044478_010 Hb_044478_010 Hb_006291_050--Hb_044478_010 Hb_001999_230--Hb_000254_130 Hb_001999_230--Hb_000099_120 Hb_000497_050 Hb_000497_050 Hb_001999_230--Hb_000497_050 Hb_001564_120 Hb_001564_120 Hb_001999_230--Hb_001564_120 Hb_001975_100 Hb_001975_100 Hb_001999_230--Hb_001975_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.173207 1.09774 1.07159 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0207749 2.71443

CAGE analysis