Hb_009193_100

Information

Type -
Description -
Location Contig9193: 82632-84611
Sequence    

Annotation

kegg
ID rcu:RCOM_1620820
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP41302.1
description hypothetical protein JCGZ_15709 [Jatropha curcas]
swissprot
ID P0C7R4
description Pentatricopeptide repeat-containing protein At1g69290 OS=Arabidopsis thaliana GN=At1g69290 PE=2 SV=1
trembl
ID A0A067KYT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15709 PE=4 SV=1
Gene Ontology
ID GO:0030247
description pentatricopeptide repeat-containing protein at1g69290-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62337: 82840-82968 , PASA_asmbl_62338: 83076-83695 , PASA_asmbl_62339: 84520-84918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009193_100 0.0 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
2 Hb_000699_230 0.1241036553 - - Ankyrin repeat family protein, putative [Theobroma cacao]
3 Hb_001623_160 0.1249123605 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
4 Hb_000625_090 0.1283649387 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000381_110 0.1314259635 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X2 [Jatropha curcas]
6 Hb_000997_180 0.1344715149 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000251_030 0.1371673714 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
8 Hb_000152_320 0.1379920807 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000983_080 0.1396906326 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
10 Hb_128589_010 0.1404498968 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
11 Hb_012760_040 0.1424469475 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
12 Hb_001341_100 0.1438190048 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
13 Hb_003327_070 0.1466911817 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
14 Hb_005550_010 0.1496632449 - - PREDICTED: 3-ketoacyl-CoA synthase 4-like [Jatropha curcas]
15 Hb_005914_140 0.1504993921 - - PREDICTED: uncharacterized protein LOC105632183 [Jatropha curcas]
16 Hb_000144_120 0.1510453678 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_007904_130 0.1512955572 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
18 Hb_100147_010 0.1518092657 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
19 Hb_001214_090 0.1535342705 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
20 Hb_001726_110 0.1545450018 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]

Gene co-expression network

sample Hb_009193_100 Hb_009193_100 Hb_000699_230 Hb_000699_230 Hb_009193_100--Hb_000699_230 Hb_001623_160 Hb_001623_160 Hb_009193_100--Hb_001623_160 Hb_000625_090 Hb_000625_090 Hb_009193_100--Hb_000625_090 Hb_000381_110 Hb_000381_110 Hb_009193_100--Hb_000381_110 Hb_000997_180 Hb_000997_180 Hb_009193_100--Hb_000997_180 Hb_000251_030 Hb_000251_030 Hb_009193_100--Hb_000251_030 Hb_000699_230--Hb_000997_180 Hb_000110_300 Hb_000110_300 Hb_000699_230--Hb_000110_300 Hb_001268_120 Hb_001268_120 Hb_000699_230--Hb_001268_120 Hb_000699_230--Hb_000625_090 Hb_002915_060 Hb_002915_060 Hb_000699_230--Hb_002915_060 Hb_001214_090 Hb_001214_090 Hb_001623_160--Hb_001214_090 Hb_001623_160--Hb_000381_110 Hb_003038_140 Hb_003038_140 Hb_001623_160--Hb_003038_140 Hb_001971_060 Hb_001971_060 Hb_001623_160--Hb_001971_060 Hb_004079_080 Hb_004079_080 Hb_001623_160--Hb_004079_080 Hb_001332_040 Hb_001332_040 Hb_001623_160--Hb_001332_040 Hb_000625_090--Hb_002915_060 Hb_000625_090--Hb_000997_180 Hb_013057_020 Hb_013057_020 Hb_000625_090--Hb_013057_020 Hb_006006_040 Hb_006006_040 Hb_000625_090--Hb_006006_040 Hb_000227_160 Hb_000227_160 Hb_000625_090--Hb_000227_160 Hb_000625_090--Hb_000110_300 Hb_000381_110--Hb_001971_060 Hb_100147_010 Hb_100147_010 Hb_000381_110--Hb_100147_010 Hb_000025_190 Hb_000025_190 Hb_000381_110--Hb_000025_190 Hb_000381_110--Hb_000251_030 Hb_001221_020 Hb_001221_020 Hb_000381_110--Hb_001221_020 Hb_002631_010 Hb_002631_010 Hb_000381_110--Hb_002631_010 Hb_000997_180--Hb_002915_060 Hb_003327_070 Hb_003327_070 Hb_000997_180--Hb_003327_070 Hb_000490_060 Hb_000490_060 Hb_000997_180--Hb_000490_060 Hb_006501_160 Hb_006501_160 Hb_000997_180--Hb_006501_160 Hb_002477_290 Hb_002477_290 Hb_000251_030--Hb_002477_290 Hb_007218_120 Hb_007218_120 Hb_000251_030--Hb_007218_120 Hb_001728_140 Hb_001728_140 Hb_000251_030--Hb_001728_140 Hb_003376_180 Hb_003376_180 Hb_000251_030--Hb_003376_180 Hb_006059_010 Hb_006059_010 Hb_000251_030--Hb_006059_010 Hb_000548_070 Hb_000548_070 Hb_000251_030--Hb_000548_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.63785 2.66388 0.993244 2.9654 0.272374 0.446474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11825 1.45448 2.48507 4.04384 1.40369

CAGE analysis