Hb_009218_010

Information

Type -
Description -
Location Contig9218: 45022-50954
Sequence    

Annotation

kegg
ID tcc:TCM_001329
description Endonuclease or glycosyl hydrolase, putative isoform 1
nr
ID XP_012075307.1
description PREDICTED: uncharacterized protein LOC105636602 isoform X1 [Jatropha curcas]
swissprot
ID Q9Y4F3
description Meiosis arrest female protein 1 OS=Homo sapiens GN=KIAA0430 PE=1 SV=6
trembl
ID A0A067KGG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09475 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62464: 45214-45375 , PASA_asmbl_62465: 45554-47378 , PASA_asmbl_62466: 47460-47655 , PASA_asmbl_62468: 48449-49657 , PASA_asmbl_62469: 50456-50658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009218_010 0.0 - - PREDICTED: uncharacterized protein LOC105636602 isoform X1 [Jatropha curcas]
2 Hb_172632_080 0.0579553027 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
3 Hb_001341_170 0.0671006254 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
4 Hb_004143_060 0.0723053172 - - DNA binding protein, putative [Ricinus communis]
5 Hb_110291_010 0.0724049246 - - conserved hypothetical protein [Ricinus communis]
6 Hb_044728_010 0.073643245 - - -
7 Hb_001199_100 0.0749227449 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
8 Hb_000665_060 0.0756926914 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
9 Hb_001198_100 0.07720145 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
10 Hb_000225_040 0.0772392838 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
11 Hb_000009_560 0.0800403438 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
12 Hb_001638_170 0.0800917894 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
13 Hb_000156_010 0.080158083 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
14 Hb_000792_010 0.0803585552 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
15 Hb_001538_130 0.0827203803 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010618_010 0.0843780991 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
17 Hb_028912_050 0.0845328221 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
18 Hb_000092_170 0.0847218114 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
19 Hb_000329_710 0.0848355608 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
20 Hb_000613_050 0.0855211795 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_009218_010 Hb_009218_010 Hb_172632_080 Hb_172632_080 Hb_009218_010--Hb_172632_080 Hb_001341_170 Hb_001341_170 Hb_009218_010--Hb_001341_170 Hb_004143_060 Hb_004143_060 Hb_009218_010--Hb_004143_060 Hb_110291_010 Hb_110291_010 Hb_009218_010--Hb_110291_010 Hb_044728_010 Hb_044728_010 Hb_009218_010--Hb_044728_010 Hb_001199_100 Hb_001199_100 Hb_009218_010--Hb_001199_100 Hb_000072_220 Hb_000072_220 Hb_172632_080--Hb_000072_220 Hb_172632_080--Hb_001199_100 Hb_009548_020 Hb_009548_020 Hb_172632_080--Hb_009548_020 Hb_000457_260 Hb_000457_260 Hb_172632_080--Hb_000457_260 Hb_188063_020 Hb_188063_020 Hb_172632_080--Hb_188063_020 Hb_004724_150 Hb_004724_150 Hb_001341_170--Hb_004724_150 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_000890_210 Hb_000890_210 Hb_001341_170--Hb_000890_210 Hb_000556_160 Hb_000556_160 Hb_001341_170--Hb_000556_160 Hb_011485_070 Hb_011485_070 Hb_001341_170--Hb_011485_070 Hb_010618_010 Hb_010618_010 Hb_001341_170--Hb_010618_010 Hb_000331_260 Hb_000331_260 Hb_004143_060--Hb_000331_260 Hb_016172_020 Hb_016172_020 Hb_004143_060--Hb_016172_020 Hb_007390_010 Hb_007390_010 Hb_004143_060--Hb_007390_010 Hb_011037_030 Hb_011037_030 Hb_004143_060--Hb_011037_030 Hb_000696_330 Hb_000696_330 Hb_004143_060--Hb_000696_330 Hb_000215_110 Hb_000215_110 Hb_004143_060--Hb_000215_110 Hb_003878_070 Hb_003878_070 Hb_110291_010--Hb_003878_070 Hb_001638_170 Hb_001638_170 Hb_110291_010--Hb_001638_170 Hb_110291_010--Hb_004143_060 Hb_001014_160 Hb_001014_160 Hb_110291_010--Hb_001014_160 Hb_165928_020 Hb_165928_020 Hb_110291_010--Hb_165928_020 Hb_009767_110 Hb_009767_110 Hb_044728_010--Hb_009767_110 Hb_000107_330 Hb_000107_330 Hb_044728_010--Hb_000107_330 Hb_000092_170 Hb_000092_170 Hb_044728_010--Hb_000092_170 Hb_044728_010--Hb_000225_040 Hb_001675_180 Hb_001675_180 Hb_044728_010--Hb_001675_180 Hb_044728_010--Hb_010618_010 Hb_003253_040 Hb_003253_040 Hb_001199_100--Hb_003253_040 Hb_000343_120 Hb_000343_120 Hb_001199_100--Hb_000343_120 Hb_000166_130 Hb_000166_130 Hb_001199_100--Hb_000166_130 Hb_000613_050 Hb_000613_050 Hb_001199_100--Hb_000613_050 Hb_009545_100 Hb_009545_100 Hb_001199_100--Hb_009545_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.62442 2.59903 1.61154 2.59699 2.64873 4.67247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.17028 3.59851 3.5754 3.70536 3.22643

CAGE analysis