Hb_009222_020

Information

Type -
Description -
Location Contig9222: 10098-11373
Sequence    

Annotation

kegg
ID eus:EUTSA_v10002430mg
description hypothetical protein
nr
ID KFK33987.1
description hypothetical protein AALP_AA5G087000 [Arabis alpina]
swissprot
ID Q9SNC6
description U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1
trembl
ID A0A087GVT5
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G087000 PE=4 SV=1
Gene Ontology
ID GO:0005634
description u-box domain-containing protein 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62522: 4237-9907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009222_020 0.0 - - hypothetical protein AALP_AA5G087000 [Arabis alpina]
2 Hb_006582_020 0.1684871318 - - Zinc finger protein ZFPM1 [Theobroma cacao]
3 Hb_004324_340 0.183818981 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000599_140 0.1871616599 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Populus euphratica]
5 Hb_000116_230 0.1894636144 - - -
6 Hb_002798_060 0.1949563147 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
7 Hb_005928_110 0.1969142136 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
8 Hb_000218_030 0.2083200449 - - -
9 Hb_000270_440 0.2099339291 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
10 Hb_180333_010 0.2100209552 - - -
11 Hb_001288_080 0.2118880909 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
12 Hb_000261_490 0.2118992993 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
13 Hb_005568_080 0.2125176304 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000016_100 0.2128734349 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
15 Hb_164945_040 0.2137069143 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
16 Hb_003106_070 0.2139328747 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
17 Hb_146464_010 0.2146854613 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
18 Hb_003446_050 0.2147892633 - - hypothetical protein B456_002G034000, partial [Gossypium raimondii]
19 Hb_028487_020 0.2154253665 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
20 Hb_004032_270 0.2166765825 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_009222_020 Hb_009222_020 Hb_006582_020 Hb_006582_020 Hb_009222_020--Hb_006582_020 Hb_004324_340 Hb_004324_340 Hb_009222_020--Hb_004324_340 Hb_000599_140 Hb_000599_140 Hb_009222_020--Hb_000599_140 Hb_000116_230 Hb_000116_230 Hb_009222_020--Hb_000116_230 Hb_002798_060 Hb_002798_060 Hb_009222_020--Hb_002798_060 Hb_005928_110 Hb_005928_110 Hb_009222_020--Hb_005928_110 Hb_002435_110 Hb_002435_110 Hb_006582_020--Hb_002435_110 Hb_004032_270 Hb_004032_270 Hb_006582_020--Hb_004032_270 Hb_005843_100 Hb_005843_100 Hb_006582_020--Hb_005843_100 Hb_000016_100 Hb_000016_100 Hb_006582_020--Hb_000016_100 Hb_001318_030 Hb_001318_030 Hb_006582_020--Hb_001318_030 Hb_000237_080 Hb_000237_080 Hb_006582_020--Hb_000237_080 Hb_173953_010 Hb_173953_010 Hb_004324_340--Hb_173953_010 Hb_001610_110 Hb_001610_110 Hb_004324_340--Hb_001610_110 Hb_001623_140 Hb_001623_140 Hb_004324_340--Hb_001623_140 Hb_001288_080 Hb_001288_080 Hb_004324_340--Hb_001288_080 Hb_001720_010 Hb_001720_010 Hb_004324_340--Hb_001720_010 Hb_004324_340--Hb_005928_110 Hb_000599_140--Hb_000116_230 Hb_026698_010 Hb_026698_010 Hb_000599_140--Hb_026698_010 Hb_010407_070 Hb_010407_070 Hb_000599_140--Hb_010407_070 Hb_000599_140--Hb_002798_060 Hb_008959_030 Hb_008959_030 Hb_000599_140--Hb_008959_030 Hb_005306_130 Hb_005306_130 Hb_000599_140--Hb_005306_130 Hb_000116_230--Hb_010407_070 Hb_000116_230--Hb_000237_080 Hb_001655_070 Hb_001655_070 Hb_000116_230--Hb_001655_070 Hb_000116_230--Hb_002798_060 Hb_000116_230--Hb_008959_030 Hb_004607_150 Hb_004607_150 Hb_002798_060--Hb_004607_150 Hb_009486_190 Hb_009486_190 Hb_002798_060--Hb_009486_190 Hb_002798_060--Hb_008959_030 Hb_004012_010 Hb_004012_010 Hb_002798_060--Hb_004012_010 Hb_023536_010 Hb_023536_010 Hb_002798_060--Hb_023536_010 Hb_000109_160 Hb_000109_160 Hb_005928_110--Hb_000109_160 Hb_009615_150 Hb_009615_150 Hb_005928_110--Hb_009615_150 Hb_005928_110--Hb_001610_110 Hb_086639_070 Hb_086639_070 Hb_005928_110--Hb_086639_070 Hb_003994_180 Hb_003994_180 Hb_005928_110--Hb_003994_180 Hb_000621_080 Hb_000621_080 Hb_005928_110--Hb_000621_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.523199 0.456322 0.0507475 0.113588 0.124611 0.156928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.300886 0.473117 0.106135 0.192074 0

CAGE analysis