Hb_009222_040

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig9222: 54383-55559
Sequence    

Annotation

kegg
ID tcc:TCM_021955
description DNA binding with one finger 2.4, putative
nr
ID XP_007027045.1
description DNA binding with one finger 2.4, putative [Theobroma cacao]
swissprot
ID O80928
description Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1
trembl
ID A0A061ET14
description DNA binding with one finger 2.4, putative OS=Theobroma cacao GN=TCM_021955 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62525: 54268-55245
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009222_040 0.0 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
2 Hb_000020_210 0.0661497639 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
3 Hb_001477_060 0.0802919617 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
4 Hb_001405_170 0.0952253964 - - aspartyl protease family protein [Populus trichocarpa]
5 Hb_002053_190 0.0992087117 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
6 Hb_002890_330 0.0994187823 - - caspase, putative [Ricinus communis]
7 Hb_001427_100 0.1018550115 - - acc synthase, putative [Ricinus communis]
8 Hb_039946_060 0.1035425619 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
9 Hb_002960_030 0.1039351101 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
10 Hb_001022_070 0.1066627096 - - cell wall invertase [Manihot esculenta]
11 Hb_001638_340 0.1088030391 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002534_070 0.1098235561 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
13 Hb_001541_210 0.1156307178 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
14 Hb_124677_090 0.1163754091 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005741_030 0.1178003709 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
16 Hb_005111_020 0.1182976245 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
17 Hb_003427_020 0.1191020131 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
18 Hb_002762_100 0.120518378 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_010174_200 0.1212162168 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
20 Hb_002804_070 0.1221194549 - - hypothetical protein JCGZ_05701 [Jatropha curcas]

Gene co-expression network

sample Hb_009222_040 Hb_009222_040 Hb_000020_210 Hb_000020_210 Hb_009222_040--Hb_000020_210 Hb_001477_060 Hb_001477_060 Hb_009222_040--Hb_001477_060 Hb_001405_170 Hb_001405_170 Hb_009222_040--Hb_001405_170 Hb_002053_190 Hb_002053_190 Hb_009222_040--Hb_002053_190 Hb_002890_330 Hb_002890_330 Hb_009222_040--Hb_002890_330 Hb_001427_100 Hb_001427_100 Hb_009222_040--Hb_001427_100 Hb_005111_020 Hb_005111_020 Hb_000020_210--Hb_005111_020 Hb_000020_210--Hb_001427_100 Hb_000020_210--Hb_001405_170 Hb_122951_010 Hb_122951_010 Hb_000020_210--Hb_122951_010 Hb_039946_060 Hb_039946_060 Hb_000020_210--Hb_039946_060 Hb_124677_090 Hb_124677_090 Hb_001477_060--Hb_124677_090 Hb_007357_010 Hb_007357_010 Hb_001477_060--Hb_007357_010 Hb_001638_340 Hb_001638_340 Hb_001477_060--Hb_001638_340 Hb_008895_020 Hb_008895_020 Hb_001477_060--Hb_008895_020 Hb_161103_010 Hb_161103_010 Hb_001477_060--Hb_161103_010 Hb_001405_170--Hb_002053_190 Hb_002960_030 Hb_002960_030 Hb_001405_170--Hb_002960_030 Hb_081864_010 Hb_081864_010 Hb_001405_170--Hb_081864_010 Hb_001541_210 Hb_001541_210 Hb_001405_170--Hb_001541_210 Hb_009771_040 Hb_009771_040 Hb_001405_170--Hb_009771_040 Hb_002168_070 Hb_002168_070 Hb_001405_170--Hb_002168_070 Hb_002053_190--Hb_002890_330 Hb_002043_070 Hb_002043_070 Hb_002053_190--Hb_002043_070 Hb_002053_190--Hb_002960_030 Hb_002053_190--Hb_002168_070 Hb_002053_190--Hb_001541_210 Hb_002890_330--Hb_002043_070 Hb_002890_330--Hb_001541_210 Hb_002890_330--Hb_002960_030 Hb_002890_330--Hb_001405_170 Hb_001427_100--Hb_039946_060 Hb_001408_080 Hb_001408_080 Hb_001427_100--Hb_001408_080 Hb_001427_100--Hb_005111_020 Hb_010164_030 Hb_010164_030 Hb_001427_100--Hb_010164_030 Hb_000012_350 Hb_000012_350 Hb_001427_100--Hb_000012_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0211395 2.67572 2.312 5.33934 0.0198124 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0917457 2.02952

CAGE analysis