Hb_009222_080

Information

Type -
Description -
Location Contig9222: 122045-122575
Sequence    

Annotation

kegg
ID rcu:RCOM_1247640
description RING-H2 finger protein ATL2J, putative
nr
ID XP_002527730.1
description RING-H2 finger protein ATL2J, putative [Ricinus communis]
swissprot
ID O80927
description RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2 SV=2
trembl
ID B9SP11
description RING-H2 finger protein ATL2J, putative OS=Ricinus communis GN=RCOM_1247640 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring-h2 finger protein atl33-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62530: 121667-122600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009222_080 0.0 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
2 Hb_002685_220 0.0999609458 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
3 Hb_006916_140 0.105846068 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
4 Hb_005725_160 0.1162389207 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
5 Hb_010968_030 0.1231409678 - - PREDICTED: uncharacterized protein LOC105643149 [Jatropha curcas]
6 Hb_005329_030 0.1259021915 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
7 Hb_000245_100 0.1268707866 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
8 Hb_002097_080 0.1327302556 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
9 Hb_001008_080 0.1336142703 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
10 Hb_094437_020 0.1371756997 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
11 Hb_003097_220 0.1413942109 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
12 Hb_002495_030 0.1444984552 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
13 Hb_002095_020 0.1449379665 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
14 Hb_000392_490 0.146270346 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
15 Hb_000659_040 0.1477955462 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
16 Hb_143871_010 0.1481212073 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
17 Hb_060198_010 0.1484056913 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
18 Hb_020378_020 0.1492168153 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_000834_100 0.150185595 - - PREDICTED: uncharacterized protein LOC105178355 [Sesamum indicum]
20 Hb_011161_090 0.1514678834 - - -

Gene co-expression network

sample Hb_009222_080 Hb_009222_080 Hb_002685_220 Hb_002685_220 Hb_009222_080--Hb_002685_220 Hb_006916_140 Hb_006916_140 Hb_009222_080--Hb_006916_140 Hb_005725_160 Hb_005725_160 Hb_009222_080--Hb_005725_160 Hb_010968_030 Hb_010968_030 Hb_009222_080--Hb_010968_030 Hb_005329_030 Hb_005329_030 Hb_009222_080--Hb_005329_030 Hb_000245_100 Hb_000245_100 Hb_009222_080--Hb_000245_100 Hb_002097_080 Hb_002097_080 Hb_002685_220--Hb_002097_080 Hb_000107_550 Hb_000107_550 Hb_002685_220--Hb_000107_550 Hb_002740_100 Hb_002740_100 Hb_002685_220--Hb_002740_100 Hb_002495_030 Hb_002495_030 Hb_002685_220--Hb_002495_030 Hb_001976_020 Hb_001976_020 Hb_002685_220--Hb_001976_020 Hb_000963_120 Hb_000963_120 Hb_006916_140--Hb_000963_120 Hb_006916_140--Hb_005329_030 Hb_000392_490 Hb_000392_490 Hb_006916_140--Hb_000392_490 Hb_000023_180 Hb_000023_180 Hb_006916_140--Hb_000023_180 Hb_094437_020 Hb_094437_020 Hb_006916_140--Hb_094437_020 Hb_001950_100 Hb_001950_100 Hb_005725_160--Hb_001950_100 Hb_001232_040 Hb_001232_040 Hb_005725_160--Hb_001232_040 Hb_003097_220 Hb_003097_220 Hb_005725_160--Hb_003097_220 Hb_000622_030 Hb_000622_030 Hb_005725_160--Hb_000622_030 Hb_002168_070 Hb_002168_070 Hb_005725_160--Hb_002168_070 Hb_000392_540 Hb_000392_540 Hb_010968_030--Hb_000392_540 Hb_000367_080 Hb_000367_080 Hb_010968_030--Hb_000367_080 Hb_001008_080 Hb_001008_080 Hb_010968_030--Hb_001008_080 Hb_011224_150 Hb_011224_150 Hb_010968_030--Hb_011224_150 Hb_001195_380 Hb_001195_380 Hb_010968_030--Hb_001195_380 Hb_005329_030--Hb_000023_180 Hb_004374_030 Hb_004374_030 Hb_005329_030--Hb_004374_030 Hb_005329_030--Hb_000963_120 Hb_004204_220 Hb_004204_220 Hb_005329_030--Hb_004204_220 Hb_000000_290 Hb_000000_290 Hb_005329_030--Hb_000000_290 Hb_000245_100--Hb_005329_030 Hb_037684_010 Hb_037684_010 Hb_000245_100--Hb_037684_010 Hb_003858_060 Hb_003858_060 Hb_000245_100--Hb_003858_060 Hb_006355_070 Hb_006355_070 Hb_000245_100--Hb_006355_070 Hb_000245_100--Hb_004204_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.9825 33.9954 13.7721 70.0041 1.707 1.14234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.8526 2.00969 1.14823 20.0659 66.8597

CAGE analysis