Hb_009225_060

Information

Type -
Description -
Location Contig9225: 121700-123064
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25610g
description POPTRDRAFT_415759; hypothetical protein
nr
ID XP_011019623.1
description PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
swissprot
ID Q8I0F4
description Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1
trembl
ID B9H901
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25610g PE=4 SV=2
Gene Ontology
ID GO:0003847
description myosin heavy chain kinase b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62539: 121648-123162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009225_060 0.0 - - PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
2 Hb_009233_020 0.0250867728 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
3 Hb_004880_020 0.0313080246 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
4 Hb_000077_020 0.0348753133 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003734_070 0.0584545711 - - chlorophyll A/B binding protein, putative [Ricinus communis]
6 Hb_085682_010 0.06416254 - - -
7 Hb_006588_140 0.0656222312 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
8 Hb_126714_010 0.0673734582 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
9 Hb_004807_010 0.0678770879 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
10 Hb_068580_010 0.0760388134 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
11 Hb_000329_120 0.0797315048 - - 21 kDa protein precursor, putative [Ricinus communis]
12 Hb_001507_060 0.0807833865 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
13 Hb_001426_020 0.0823847392 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
14 Hb_004837_010 0.0876004078 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
15 Hb_000487_080 0.0883153938 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
16 Hb_003086_140 0.0891483911 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
17 Hb_004993_020 0.0899012936 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
18 Hb_003913_120 0.0914355891 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
19 Hb_009588_010 0.0917864406 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
20 Hb_189208_070 0.0950181254 - - 10-deacetylbaccatin III 10-O-acetyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009225_060 Hb_009225_060 Hb_009233_020 Hb_009233_020 Hb_009225_060--Hb_009233_020 Hb_004880_020 Hb_004880_020 Hb_009225_060--Hb_004880_020 Hb_000077_020 Hb_000077_020 Hb_009225_060--Hb_000077_020 Hb_003734_070 Hb_003734_070 Hb_009225_060--Hb_003734_070 Hb_085682_010 Hb_085682_010 Hb_009225_060--Hb_085682_010 Hb_006588_140 Hb_006588_140 Hb_009225_060--Hb_006588_140 Hb_009233_020--Hb_000077_020 Hb_009233_020--Hb_085682_010 Hb_009233_020--Hb_004880_020 Hb_009233_020--Hb_003734_070 Hb_000329_120 Hb_000329_120 Hb_009233_020--Hb_000329_120 Hb_004880_020--Hb_000077_020 Hb_004880_020--Hb_003734_070 Hb_068580_010 Hb_068580_010 Hb_004880_020--Hb_068580_010 Hb_001426_020 Hb_001426_020 Hb_004880_020--Hb_001426_020 Hb_000077_020--Hb_003734_070 Hb_000077_020--Hb_068580_010 Hb_001507_060 Hb_001507_060 Hb_000077_020--Hb_001507_060 Hb_003734_070--Hb_068580_010 Hb_009588_010 Hb_009588_010 Hb_003734_070--Hb_009588_010 Hb_085682_010--Hb_000329_120 Hb_158001_010 Hb_158001_010 Hb_085682_010--Hb_158001_010 Hb_004837_010 Hb_004837_010 Hb_085682_010--Hb_004837_010 Hb_085682_010--Hb_001507_060 Hb_085682_010--Hb_000077_020 Hb_126714_010 Hb_126714_010 Hb_006588_140--Hb_126714_010 Hb_005833_010 Hb_005833_010 Hb_006588_140--Hb_005833_010 Hb_006588_140--Hb_001426_020 Hb_000358_260 Hb_000358_260 Hb_006588_140--Hb_000358_260 Hb_001534_130 Hb_001534_130 Hb_006588_140--Hb_001534_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.9625 2.9289 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.39649

CAGE analysis