Hb_009225_070

Information

Type -
Description -
Location Contig9225: 125867-127064
Sequence    

Annotation

kegg
ID rcu:RCOM_0801990
description tonoplast intrinsic protein, putative
nr
ID XP_002516539.1
description tonoplast intrinsic protein, putative [Ricinus communis]
swissprot
ID O82316
description Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1
trembl
ID B9RS20
description Tonoplast intrinsic protein, putative OS=Ricinus communis GN=RCOM_0801990 PE=3 SV=1
Gene Ontology
ID GO:0009705
description aquaporin tip4-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62540: 125885-127412
cDNA
(Sanger)
(ID:Location)		 012_A14.ab1: 126061-127115 , 016_H18.ab1: 126098-127115 , 022_J17.ab1: 126180-127115 , 036_L18.ab1: 126026-127115 , 041_J11.ab1: 126609-127412 , 048_C23.ab1: 126092-127115

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009225_070 0.0 - - tonoplast intrinsic protein, putative [Ricinus communis]
2 Hb_000468_050 0.0562978517 - - -
3 Hb_002592_070 0.0840111735 - - hypothetical protein VITISV_020993 [Vitis vinifera]
4 Hb_000816_150 0.0856277339 - - oligopeptide transporter, putative [Ricinus communis]
5 Hb_011314_010 0.0860002113 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
6 Hb_012553_030 0.0912754674 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
7 Hb_022693_090 0.0947288395 - - glycosyltransferase, putative [Ricinus communis]
8 Hb_000453_290 0.0992868966 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
9 Hb_120040_010 0.1024090865 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_003582_030 0.1071997336 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
11 Hb_001117_180 0.1156604628 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
12 Hb_017700_030 0.1175399046 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
13 Hb_000714_070 0.11772172 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
14 Hb_004785_170 0.118155496 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
15 Hb_015884_010 0.1206427537 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
16 Hb_005056_120 0.1232855111 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_011985_020 0.1269545152 - - PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
18 Hb_000384_020 0.1292158474 - - sucrose phosphate syntase, putative [Ricinus communis]
19 Hb_000646_040 0.1299975852 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
20 Hb_000149_020 0.1316762286 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]

Gene co-expression network

sample Hb_009225_070 Hb_009225_070 Hb_000468_050 Hb_000468_050 Hb_009225_070--Hb_000468_050 Hb_002592_070 Hb_002592_070 Hb_009225_070--Hb_002592_070 Hb_000816_150 Hb_000816_150 Hb_009225_070--Hb_000816_150 Hb_011314_010 Hb_011314_010 Hb_009225_070--Hb_011314_010 Hb_012553_030 Hb_012553_030 Hb_009225_070--Hb_012553_030 Hb_022693_090 Hb_022693_090 Hb_009225_070--Hb_022693_090 Hb_000468_050--Hb_012553_030 Hb_000468_050--Hb_000816_150 Hb_000468_050--Hb_002592_070 Hb_000453_290 Hb_000453_290 Hb_000468_050--Hb_000453_290 Hb_004785_170 Hb_004785_170 Hb_000468_050--Hb_004785_170 Hb_002592_070--Hb_000453_290 Hb_002592_070--Hb_012553_030 Hb_001117_180 Hb_001117_180 Hb_002592_070--Hb_001117_180 Hb_002592_070--Hb_022693_090 Hb_000384_020 Hb_000384_020 Hb_000816_150--Hb_000384_020 Hb_114733_010 Hb_114733_010 Hb_000816_150--Hb_114733_010 Hb_017700_030 Hb_017700_030 Hb_000816_150--Hb_017700_030 Hb_000991_080 Hb_000991_080 Hb_000816_150--Hb_000991_080 Hb_011314_010--Hb_022693_090 Hb_004374_040 Hb_004374_040 Hb_011314_010--Hb_004374_040 Hb_003126_120 Hb_003126_120 Hb_011314_010--Hb_003126_120 Hb_011314_010--Hb_004785_170 Hb_003582_030 Hb_003582_030 Hb_011314_010--Hb_003582_030 Hb_015884_010 Hb_015884_010 Hb_012553_030--Hb_015884_010 Hb_103541_010 Hb_103541_010 Hb_012553_030--Hb_103541_010 Hb_000090_020 Hb_000090_020 Hb_012553_030--Hb_000090_020 Hb_022693_090--Hb_000453_290 Hb_002384_030 Hb_002384_030 Hb_022693_090--Hb_002384_030 Hb_001360_020 Hb_001360_020 Hb_022693_090--Hb_001360_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.351055 66.63 23.1002 199.072 0.414028 0.149274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0428998 0.0786449 19.973 31.5433

CAGE analysis