Hb_009233_020

Information

Type -
Description -
Location Contig9233: 8529-9926
Sequence    

Annotation

kegg
ID rcu:RCOM_1227380
description acyltransferase, putative
nr
ID XP_012064956.1
description PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
swissprot
ID Q9SIB2
description 3-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana GN=KCS12 PE=2 SV=1
trembl
ID A0A067LAD5
description 3-ketoacyl-CoA synthase OS=Jatropha curcas GN=JCGZ_05640 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009233_020 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
2 Hb_009225_060 0.0250867728 - - PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
3 Hb_000077_020 0.0333468795 - - conserved hypothetical protein [Ricinus communis]
4 Hb_085682_010 0.0397095108 - - -
5 Hb_004880_020 0.0436748941 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
6 Hb_003734_070 0.0532871084 - - chlorophyll A/B binding protein, putative [Ricinus communis]
7 Hb_000329_120 0.0614493784 - - 21 kDa protein precursor, putative [Ricinus communis]
8 Hb_001507_060 0.0620967852 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
9 Hb_004807_010 0.0629778808 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
10 Hb_004837_010 0.0688180257 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
11 Hb_158001_010 0.0714309365 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
12 Hb_068580_010 0.0753251034 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
13 Hb_001295_070 0.0778449961 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
14 Hb_003086_140 0.0797150586 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
15 Hb_003913_120 0.0807880756 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
16 Hb_002328_080 0.0816775836 - - short-chain dehydrogenase, putative [Ricinus communis]
17 Hb_000844_080 0.0840677847 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
18 Hb_004993_020 0.0870914737 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
19 Hb_006588_140 0.0884709873 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
20 Hb_000179_010 0.0893933922 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]

Gene co-expression network

sample Hb_009233_020 Hb_009233_020 Hb_009225_060 Hb_009225_060 Hb_009233_020--Hb_009225_060 Hb_000077_020 Hb_000077_020 Hb_009233_020--Hb_000077_020 Hb_085682_010 Hb_085682_010 Hb_009233_020--Hb_085682_010 Hb_004880_020 Hb_004880_020 Hb_009233_020--Hb_004880_020 Hb_003734_070 Hb_003734_070 Hb_009233_020--Hb_003734_070 Hb_000329_120 Hb_000329_120 Hb_009233_020--Hb_000329_120 Hb_009225_060--Hb_004880_020 Hb_009225_060--Hb_000077_020 Hb_009225_060--Hb_003734_070 Hb_009225_060--Hb_085682_010 Hb_006588_140 Hb_006588_140 Hb_009225_060--Hb_006588_140 Hb_000077_020--Hb_004880_020 Hb_000077_020--Hb_003734_070 Hb_068580_010 Hb_068580_010 Hb_000077_020--Hb_068580_010 Hb_001507_060 Hb_001507_060 Hb_000077_020--Hb_001507_060 Hb_085682_010--Hb_000329_120 Hb_158001_010 Hb_158001_010 Hb_085682_010--Hb_158001_010 Hb_004837_010 Hb_004837_010 Hb_085682_010--Hb_004837_010 Hb_085682_010--Hb_001507_060 Hb_085682_010--Hb_000077_020 Hb_004880_020--Hb_003734_070 Hb_004880_020--Hb_068580_010 Hb_001426_020 Hb_001426_020 Hb_004880_020--Hb_001426_020 Hb_003734_070--Hb_068580_010 Hb_009588_010 Hb_009588_010 Hb_003734_070--Hb_009588_010 Hb_001232_070 Hb_001232_070 Hb_000329_120--Hb_001232_070 Hb_002391_340 Hb_002391_340 Hb_000329_120--Hb_002391_340 Hb_006483_040 Hb_006483_040 Hb_000329_120--Hb_006483_040 Hb_004807_010 Hb_004807_010 Hb_000329_120--Hb_004807_010 Hb_005839_040 Hb_005839_040 Hb_000329_120--Hb_005839_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 8.98968 8.58663 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 14.7316

CAGE analysis