Hb_009233_030

Information

Type -
Description -
Location Contig9233: 34159-36045
Sequence    

Annotation

kegg
ID rcu:RCOM_0392600
description protein binding protein, putative
nr
ID XP_002534730.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9LZD3
description Exocyst complex component EXO70A1 OS=Arabidopsis thaliana GN=EXO70A1 PE=1 SV=1
trembl
ID B9T911
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0392600 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component exo70b1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009233_030 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_002110_240 0.179029736 - - clathrin assembly protein, putative [Ricinus communis]
3 Hb_005663_070 0.1861043043 - - dehydrin protein [Manihot esculenta]
4 Hb_000256_130 0.1867724556 - - hypothetical protein 21 [Hevea brasiliensis]
5 Hb_006909_060 0.1886865524 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Solanum lycopersicum]
6 Hb_000008_110 0.2021916335 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
7 Hb_000023_250 0.2043142725 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
8 Hb_000732_250 0.2055382673 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
9 Hb_000343_180 0.2073389406 - - NDWp3 [Podospora anserina]
10 Hb_003078_050 0.2116984816 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
11 Hb_000976_280 0.214375235 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
12 Hb_002849_140 0.2152891994 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
13 Hb_023344_080 0.2200917434 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
14 Hb_000634_070 0.2214990936 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
15 Hb_001123_200 0.2234815258 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000210_010 0.2249294507 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
17 Hb_167776_030 0.2250074507 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
18 Hb_000056_170 0.2253894386 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002272_010 0.2254332348 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000987_060 0.2258402271 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]

Gene co-expression network

sample Hb_009233_030 Hb_009233_030 Hb_002110_240 Hb_002110_240 Hb_009233_030--Hb_002110_240 Hb_005663_070 Hb_005663_070 Hb_009233_030--Hb_005663_070 Hb_000256_130 Hb_000256_130 Hb_009233_030--Hb_000256_130 Hb_006909_060 Hb_006909_060 Hb_009233_030--Hb_006909_060 Hb_000008_110 Hb_000008_110 Hb_009233_030--Hb_000008_110 Hb_000023_250 Hb_000023_250 Hb_009233_030--Hb_000023_250 Hb_002205_010 Hb_002205_010 Hb_002110_240--Hb_002205_010 Hb_008173_030 Hb_008173_030 Hb_002110_240--Hb_008173_030 Hb_002110_240--Hb_000256_130 Hb_020400_040 Hb_020400_040 Hb_002110_240--Hb_020400_040 Hb_000343_180 Hb_000343_180 Hb_002110_240--Hb_000343_180 Hb_171900_020 Hb_171900_020 Hb_005663_070--Hb_171900_020 Hb_005663_070--Hb_006909_060 Hb_004724_210 Hb_004724_210 Hb_005663_070--Hb_004724_210 Hb_001944_020 Hb_001944_020 Hb_005663_070--Hb_001944_020 Hb_001235_170 Hb_001235_170 Hb_005663_070--Hb_001235_170 Hb_012107_010 Hb_012107_010 Hb_005663_070--Hb_012107_010 Hb_000256_130--Hb_000023_250 Hb_000364_040 Hb_000364_040 Hb_000256_130--Hb_000364_040 Hb_000976_280 Hb_000976_280 Hb_000256_130--Hb_000976_280 Hb_000256_130--Hb_012107_010 Hb_000634_070 Hb_000634_070 Hb_000256_130--Hb_000634_070 Hb_000256_130--Hb_005663_070 Hb_000210_010 Hb_000210_010 Hb_006909_060--Hb_000210_010 Hb_000987_060 Hb_000987_060 Hb_006909_060--Hb_000987_060 Hb_000056_170 Hb_000056_170 Hb_006909_060--Hb_000056_170 Hb_006909_060--Hb_171900_020 Hb_002701_220 Hb_002701_220 Hb_006909_060--Hb_002701_220 Hb_006909_060--Hb_001944_020 Hb_001511_190 Hb_001511_190 Hb_000008_110--Hb_001511_190 Hb_005545_070 Hb_005545_070 Hb_000008_110--Hb_005545_070 Hb_006916_200 Hb_006916_200 Hb_000008_110--Hb_006916_200 Hb_000417_420 Hb_000417_420 Hb_000008_110--Hb_000417_420 Hb_000008_110--Hb_005663_070 Hb_000008_110--Hb_012107_010 Hb_000023_250--Hb_000976_280 Hb_000023_250--Hb_000364_040 Hb_116349_040 Hb_116349_040 Hb_000023_250--Hb_116349_040 Hb_000023_250--Hb_005663_070 Hb_006788_140 Hb_006788_140 Hb_000023_250--Hb_006788_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.6796 38.1202 7.15678 11.5611 0.852627 1.19909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9633 16.8037 16.4268 1.463 1.159

CAGE analysis