Hb_009246_010

Information

Type -
Description -
Location Contig9246: 3785-11546
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009246_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_010589_140 0.2251545887 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Fragaria vesca subsp. vesca]
3 Hb_002639_060 0.2888854711 - - -
4 Hb_150528_010 0.2921896817 - - conserved hypothetical protein [Ricinus communis]
5 Hb_033594_130 0.29305576 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
6 Hb_002025_200 0.2938139923 - - -
7 Hb_000062_150 0.2958694886 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
8 Hb_000576_030 0.2973712092 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540 [Jatropha curcas]
9 Hb_003030_020 0.3006215861 - - PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]
10 Hb_073171_110 0.3033586426 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
11 Hb_001959_050 0.3038268314 - - PREDICTED: uncharacterized protein LOC103323811 isoform X1 [Prunus mume]
12 Hb_022250_170 0.3053541175 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Populus euphratica]
13 Hb_001832_190 0.3061941572 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000327_240 0.3075325682 - - PREDICTED: interaptin-like [Jatropha curcas]
15 Hb_000345_210 0.3088846038 - - PREDICTED: uncharacterized protein LOC105647523 [Jatropha curcas]
16 Hb_006371_010 0.309468605 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
17 Hb_006130_010 0.3113910189 - - PREDICTED: CTP synthase [Jatropha curcas]
18 Hb_002182_040 0.3114161898 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_003786_020 0.3118057655 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
20 Hb_002326_050 0.3128750248 - - PREDICTED: uncharacterized protein LOC105633701 [Jatropha curcas]

Gene co-expression network

sample Hb_009246_010 Hb_009246_010 Hb_010589_140 Hb_010589_140 Hb_009246_010--Hb_010589_140 Hb_002639_060 Hb_002639_060 Hb_009246_010--Hb_002639_060 Hb_150528_010 Hb_150528_010 Hb_009246_010--Hb_150528_010 Hb_033594_130 Hb_033594_130 Hb_009246_010--Hb_033594_130 Hb_002025_200 Hb_002025_200 Hb_009246_010--Hb_002025_200 Hb_000062_150 Hb_000062_150 Hb_009246_010--Hb_000062_150 Hb_010589_140--Hb_002639_060 Hb_000772_040 Hb_000772_040 Hb_010589_140--Hb_000772_040 Hb_001703_120 Hb_001703_120 Hb_010589_140--Hb_001703_120 Hb_039262_010 Hb_039262_010 Hb_010589_140--Hb_039262_010 Hb_000399_010 Hb_000399_010 Hb_010589_140--Hb_000399_010 Hb_007926_040 Hb_007926_040 Hb_002639_060--Hb_007926_040 Hb_032496_020 Hb_032496_020 Hb_002639_060--Hb_032496_020 Hb_002205_050 Hb_002205_050 Hb_002639_060--Hb_002205_050 Hb_007101_200 Hb_007101_200 Hb_002639_060--Hb_007101_200 Hb_009543_020 Hb_009543_020 Hb_002639_060--Hb_009543_020 Hb_003786_020 Hb_003786_020 Hb_002639_060--Hb_003786_020 Hb_004993_010 Hb_004993_010 Hb_150528_010--Hb_004993_010 Hb_004102_100 Hb_004102_100 Hb_150528_010--Hb_004102_100 Hb_041091_010 Hb_041091_010 Hb_150528_010--Hb_041091_010 Hb_004852_030 Hb_004852_030 Hb_150528_010--Hb_004852_030 Hb_000175_390 Hb_000175_390 Hb_150528_010--Hb_000175_390 Hb_024714_020 Hb_024714_020 Hb_150528_010--Hb_024714_020 Hb_001842_070 Hb_001842_070 Hb_033594_130--Hb_001842_070 Hb_029510_140 Hb_029510_140 Hb_033594_130--Hb_029510_140 Hb_006130_010 Hb_006130_010 Hb_033594_130--Hb_006130_010 Hb_063134_010 Hb_063134_010 Hb_033594_130--Hb_063134_010 Hb_006472_010 Hb_006472_010 Hb_033594_130--Hb_006472_010 Hb_001855_010 Hb_001855_010 Hb_033594_130--Hb_001855_010 Hb_002681_070 Hb_002681_070 Hb_002025_200--Hb_002681_070 Hb_002783_260 Hb_002783_260 Hb_002025_200--Hb_002783_260 Hb_002193_010 Hb_002193_010 Hb_002025_200--Hb_002193_010 Hb_000574_390 Hb_000574_390 Hb_002025_200--Hb_000574_390 Hb_012799_180 Hb_012799_180 Hb_002025_200--Hb_012799_180 Hb_001019_190 Hb_001019_190 Hb_002025_200--Hb_001019_190 Hb_000173_230 Hb_000173_230 Hb_000062_150--Hb_000173_230 Hb_006111_070 Hb_006111_070 Hb_000062_150--Hb_006111_070 Hb_188279_010 Hb_188279_010 Hb_000062_150--Hb_188279_010 Hb_000056_040 Hb_000056_040 Hb_000062_150--Hb_000056_040 Hb_001221_170 Hb_001221_170 Hb_000062_150--Hb_001221_170 Hb_006371_010 Hb_006371_010 Hb_000062_150--Hb_006371_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0269571 0 0 0.00294768 0.0213478 0.0194696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.01541 0.014815 0.00305055 0.016532

CAGE analysis