Hb_009247_030

Information

Type desease resistance
Description Gene Name: TIR
Location Contig9247: 23632-26257
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09760g
description hypothetical protein
nr
ID XP_012071293.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID O82500
description Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
trembl
ID U5FEN2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09760g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009247_030 0.0 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_002239_020 0.0941536206 - - MLO, putative [Theobroma cacao]
3 Hb_014361_130 0.1048269412 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
4 Hb_002097_210 0.1215115718 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002571_010 0.1235855787 - - cationic amino acid transporter, putative [Ricinus communis]
6 Hb_000072_160 0.1321027147 - - proline oxidase [Manihot esculenta]
7 Hb_000819_010 0.1327896954 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
8 Hb_000668_160 0.132910339 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
9 Hb_006198_060 0.1335558114 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
10 Hb_010921_060 0.1347435893 - - ATP binding protein, putative [Ricinus communis]
11 Hb_008040_060 0.136601879 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
12 Hb_000808_160 0.1386727336 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
13 Hb_006052_040 0.1399102881 - - pyruvate decarboxylase [Hevea brasiliensis]
14 Hb_002329_030 0.1425381573 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
15 Hb_027474_010 0.1426187849 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
16 Hb_000465_380 0.1439791053 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_043939_010 0.1441386344 - - hypothetical protein B456_N011100 [Gossypium raimondii]
18 Hb_001534_150 0.1447310327 - - PREDICTED: uncharacterized permease C29B12.14c [Jatropha curcas]
19 Hb_001515_030 0.1455097702 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_030370_070 0.1458943816 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009247_030 Hb_009247_030 Hb_002239_020 Hb_002239_020 Hb_009247_030--Hb_002239_020 Hb_014361_130 Hb_014361_130 Hb_009247_030--Hb_014361_130 Hb_002097_210 Hb_002097_210 Hb_009247_030--Hb_002097_210 Hb_002571_010 Hb_002571_010 Hb_009247_030--Hb_002571_010 Hb_000072_160 Hb_000072_160 Hb_009247_030--Hb_000072_160 Hb_000819_010 Hb_000819_010 Hb_009247_030--Hb_000819_010 Hb_010921_060 Hb_010921_060 Hb_002239_020--Hb_010921_060 Hb_002239_020--Hb_002097_210 Hb_007237_090 Hb_007237_090 Hb_002239_020--Hb_007237_090 Hb_000465_380 Hb_000465_380 Hb_002239_020--Hb_000465_380 Hb_008040_060 Hb_008040_060 Hb_002239_020--Hb_008040_060 Hb_014361_130--Hb_000072_160 Hb_002329_030 Hb_002329_030 Hb_014361_130--Hb_002329_030 Hb_002272_070 Hb_002272_070 Hb_014361_130--Hb_002272_070 Hb_145139_010 Hb_145139_010 Hb_014361_130--Hb_145139_010 Hb_066320_010 Hb_066320_010 Hb_014361_130--Hb_066320_010 Hb_027474_010 Hb_027474_010 Hb_002097_210--Hb_027474_010 Hb_008550_030 Hb_008550_030 Hb_002097_210--Hb_008550_030 Hb_002097_210--Hb_145139_010 Hb_001677_120 Hb_001677_120 Hb_002097_210--Hb_001677_120 Hb_002475_010 Hb_002475_010 Hb_002097_210--Hb_002475_010 Hb_000808_160 Hb_000808_160 Hb_002571_010--Hb_000808_160 Hb_001879_050 Hb_001879_050 Hb_002571_010--Hb_001879_050 Hb_000172_080 Hb_000172_080 Hb_002571_010--Hb_000172_080 Hb_001754_200 Hb_001754_200 Hb_002571_010--Hb_001754_200 Hb_004166_010 Hb_004166_010 Hb_002571_010--Hb_004166_010 Hb_000072_160--Hb_002272_070 Hb_000072_160--Hb_002329_030 Hb_006615_190 Hb_006615_190 Hb_000072_160--Hb_006615_190 Hb_000072_160--Hb_145139_010 Hb_002968_010 Hb_002968_010 Hb_000072_160--Hb_002968_010 Hb_000668_160 Hb_000668_160 Hb_000819_010--Hb_000668_160 Hb_009803_030 Hb_009803_030 Hb_000819_010--Hb_009803_030 Hb_000280_110 Hb_000280_110 Hb_000819_010--Hb_000280_110 Hb_000819_010--Hb_010921_060 Hb_000819_010--Hb_008040_060 Hb_000522_130 Hb_000522_130 Hb_000819_010--Hb_000522_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0161398 12.2836 1.52764 3.54069 0 0.329922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0368252 0 0 2.95494 4.21487

CAGE analysis