Hb_009252_020

Information

Type -
Description -
Location Contig9252: 27853-32695
Sequence    

Annotation

kegg
ID tcc:TCM_012052
description Serine/threonine-protein kinase HT1
nr
ID XP_012080077.1
description PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A067K4N8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11483 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62615: 27833-28852 , PASA_asmbl_62616: 27833-30169 , PASA_asmbl_62617: 32495-32670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_020 0.0 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
2 Hb_004429_080 0.148472855 - - RNA binding protein, putative [Ricinus communis]
3 Hb_001188_100 0.1640844784 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
4 Hb_000742_020 0.1712096504 - - ARF GTPase activator, putative [Ricinus communis]
5 Hb_003549_080 0.1755599411 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
6 Hb_001904_050 0.1773472122 - - alpha-tubulin 1 [Hevea brasiliensis]
7 Hb_011139_040 0.1782179268 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X2 [Jatropha curcas]
8 Hb_000854_040 0.1788943547 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
9 Hb_007044_090 0.1811299964 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
10 Hb_000878_110 0.1837117797 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_000742_160 0.1864536283 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940 [Jatropha curcas]
12 Hb_000935_040 0.1888725706 - - Uncharacterized protein isoform 2 [Theobroma cacao]
13 Hb_000012_080 0.1918062775 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
14 Hb_004931_110 0.1929445352 - - inorganic phosphate transporter, putative [Ricinus communis]
15 Hb_004994_180 0.1952000176 - - malic enzyme, putative [Ricinus communis]
16 Hb_007441_080 0.1956030217 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
17 Hb_000465_320 0.1994913919 - - PREDICTED: nudix hydrolase 8 [Jatropha curcas]
18 Hb_013394_050 0.2001287175 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
19 Hb_031527_110 0.2002385836 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
20 Hb_006711_090 0.2005172629 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_009252_020 Hb_009252_020 Hb_004429_080 Hb_004429_080 Hb_009252_020--Hb_004429_080 Hb_001188_100 Hb_001188_100 Hb_009252_020--Hb_001188_100 Hb_000742_020 Hb_000742_020 Hb_009252_020--Hb_000742_020 Hb_003549_080 Hb_003549_080 Hb_009252_020--Hb_003549_080 Hb_001904_050 Hb_001904_050 Hb_009252_020--Hb_001904_050 Hb_011139_040 Hb_011139_040 Hb_009252_020--Hb_011139_040 Hb_004429_080--Hb_000742_020 Hb_000023_310 Hb_000023_310 Hb_004429_080--Hb_000023_310 Hb_031527_110 Hb_031527_110 Hb_004429_080--Hb_031527_110 Hb_007441_080 Hb_007441_080 Hb_004429_080--Hb_007441_080 Hb_013394_050 Hb_013394_050 Hb_004429_080--Hb_013394_050 Hb_000012_080 Hb_000012_080 Hb_001188_100--Hb_000012_080 Hb_006829_060 Hb_006829_060 Hb_001188_100--Hb_006829_060 Hb_000152_440 Hb_000152_440 Hb_001188_100--Hb_000152_440 Hb_005062_060 Hb_005062_060 Hb_001188_100--Hb_005062_060 Hb_002272_240 Hb_002272_240 Hb_001188_100--Hb_002272_240 Hb_000796_150 Hb_000796_150 Hb_001188_100--Hb_000796_150 Hb_000742_020--Hb_013394_050 Hb_001609_040 Hb_001609_040 Hb_000742_020--Hb_001609_040 Hb_000742_020--Hb_007441_080 Hb_005993_010 Hb_005993_010 Hb_000742_020--Hb_005993_010 Hb_000069_640 Hb_000069_640 Hb_000742_020--Hb_000069_640 Hb_000244_170 Hb_000244_170 Hb_000742_020--Hb_000244_170 Hb_003549_080--Hb_007441_080 Hb_004965_110 Hb_004965_110 Hb_003549_080--Hb_004965_110 Hb_003549_080--Hb_001904_050 Hb_011671_260 Hb_011671_260 Hb_003549_080--Hb_011671_260 Hb_027506_040 Hb_027506_040 Hb_003549_080--Hb_027506_040 Hb_009111_020 Hb_009111_020 Hb_003549_080--Hb_009111_020 Hb_001904_050--Hb_031527_110 Hb_006711_090 Hb_006711_090 Hb_001904_050--Hb_006711_090 Hb_001904_050--Hb_000742_020 Hb_154038_020 Hb_154038_020 Hb_001904_050--Hb_154038_020 Hb_001904_050--Hb_007441_080 Hb_000181_350 Hb_000181_350 Hb_001904_050--Hb_000181_350 Hb_011606_020 Hb_011606_020 Hb_011139_040--Hb_011606_020 Hb_043792_040 Hb_043792_040 Hb_011139_040--Hb_043792_040 Hb_000027_260 Hb_000027_260 Hb_011139_040--Hb_000027_260 Hb_000243_350 Hb_000243_350 Hb_011139_040--Hb_000243_350 Hb_074197_040 Hb_074197_040 Hb_011139_040--Hb_074197_040 Hb_001014_070 Hb_001014_070 Hb_011139_040--Hb_001014_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.975999 3.05756 5.74959 8.74299 1.28078 0.666605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03357 2.25847 6.17693 0.674931 3.99904

CAGE analysis