Hb_009252_040

Information

Type -
Description -
Location Contig9252: 43262-49892
Sequence    

Annotation

kegg
ID rcu:RCOM_1510790
description EXECUTER1 protein, chloroplast precursor, putative
nr
ID XP_012080080.1
description PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
swissprot
ID Q94AT5
description Protein EXECUTER 2, chloroplastic OS=Arabidopsis thaliana GN=EX2 PE=2 SV=1
trembl
ID A0A067KGZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11485 PE=4 SV=1
Gene Ontology
ID GO:0042651
description protein executer chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62621: 43289-49799 , PASA_asmbl_62622: 44296-44722 , PASA_asmbl_62623: 50679-55031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_040 0.0 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
2 Hb_000731_010 0.0684321653 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
3 Hb_000033_110 0.0746409432 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
4 Hb_000749_090 0.0751790818 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_018118_010 0.0786994765 - - DNA polymerase I, putative [Ricinus communis]
6 Hb_013405_080 0.0795923976 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
7 Hb_000331_560 0.0811194692 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
8 Hb_000320_470 0.0816042116 - - calcium-dependent protein kinase [Hevea brasiliensis]
9 Hb_003124_100 0.0821791318 - - -
10 Hb_000130_320 0.0860105291 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
11 Hb_000349_240 0.0888056045 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
12 Hb_004003_040 0.0903479922 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_000015_100 0.0947533689 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_001790_080 0.0964594817 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
15 Hb_005801_020 0.0966946376 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
16 Hb_000815_170 0.0971318826 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
17 Hb_005250_030 0.0994245607 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
18 Hb_032920_050 0.1007017337 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
19 Hb_002600_060 0.100875919 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
20 Hb_008387_020 0.1014145239 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009252_040 Hb_009252_040 Hb_000731_010 Hb_000731_010 Hb_009252_040--Hb_000731_010 Hb_000033_110 Hb_000033_110 Hb_009252_040--Hb_000033_110 Hb_000749_090 Hb_000749_090 Hb_009252_040--Hb_000749_090 Hb_018118_010 Hb_018118_010 Hb_009252_040--Hb_018118_010 Hb_013405_080 Hb_013405_080 Hb_009252_040--Hb_013405_080 Hb_000331_560 Hb_000331_560 Hb_009252_040--Hb_000331_560 Hb_000731_010--Hb_000749_090 Hb_004003_040 Hb_004003_040 Hb_000731_010--Hb_004003_040 Hb_000538_280 Hb_000538_280 Hb_000731_010--Hb_000538_280 Hb_000731_010--Hb_000331_560 Hb_135572_010 Hb_135572_010 Hb_000731_010--Hb_135572_010 Hb_000033_110--Hb_013405_080 Hb_000320_470 Hb_000320_470 Hb_000033_110--Hb_000320_470 Hb_000033_110--Hb_004003_040 Hb_026053_040 Hb_026053_040 Hb_000033_110--Hb_026053_040 Hb_000015_100 Hb_000015_100 Hb_000033_110--Hb_000015_100 Hb_008387_020 Hb_008387_020 Hb_000749_090--Hb_008387_020 Hb_000130_320 Hb_000130_320 Hb_000749_090--Hb_000130_320 Hb_000568_050 Hb_000568_050 Hb_000749_090--Hb_000568_050 Hb_007763_070 Hb_007763_070 Hb_000749_090--Hb_007763_070 Hb_018118_010--Hb_000331_560 Hb_000265_230 Hb_000265_230 Hb_018118_010--Hb_000265_230 Hb_003203_030 Hb_003203_030 Hb_018118_010--Hb_003203_030 Hb_000679_020 Hb_000679_020 Hb_018118_010--Hb_000679_020 Hb_018118_010--Hb_004003_040 Hb_001660_120 Hb_001660_120 Hb_013405_080--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_013405_080--Hb_025477_050 Hb_000300_470 Hb_000300_470 Hb_013405_080--Hb_000300_470 Hb_005250_010 Hb_005250_010 Hb_013405_080--Hb_005250_010 Hb_013405_080--Hb_000320_470 Hb_002600_060 Hb_002600_060 Hb_000331_560--Hb_002600_060 Hb_000331_560--Hb_003203_030 Hb_003506_050 Hb_003506_050 Hb_000331_560--Hb_003506_050 Hb_000300_120 Hb_000300_120 Hb_000331_560--Hb_000300_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.276 18.4729 18.6681 15.0434 16.8642 27.3791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2276 10.2932 9.20021 19.6579 47.7362

CAGE analysis