Hb_009252_060

Information

Type -
Description -
Location Contig9252: 56382-59154
Sequence    

Annotation

kegg
ID rcu:RCOM_1510810
description phosphoglycerate mutase, putative
nr
ID XP_012080083.1
description PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4G5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11487 PE=4 SV=1
Gene Ontology
ID GO:0009965
description phosphoglycerate mutase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62625: 56344-58985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_060 0.0 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
2 Hb_019053_060 0.073407203 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
3 Hb_002893_110 0.0844769361 transcription factor TF Family: DBP PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
4 Hb_000390_090 0.0860828926 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
5 Hb_001863_120 0.1032230634 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_007416_050 0.1051425561 transcription factor TF Family: Orphans PREDICTED: histidine kinase 5 [Jatropha curcas]
7 Hb_000413_060 0.1096920322 - - PREDICTED: DAG protein, chloroplastic [Populus euphratica]
8 Hb_000035_240 0.1143501026 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007558_090 0.1149519147 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000173_250 0.1153050586 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
11 Hb_001558_080 0.1161574865 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000413_240 0.1172842445 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
13 Hb_000163_100 0.1216016511 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
14 Hb_025194_060 0.1228568189 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_001301_340 0.1237547742 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
16 Hb_000487_260 0.1247227005 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
17 Hb_001541_110 0.1255959726 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_021650_040 0.1267959131 - - EG2771 [Manihot esculenta]
19 Hb_000008_370 0.1272117716 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
20 Hb_005946_040 0.1314286319 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_009252_060 Hb_009252_060 Hb_019053_060 Hb_019053_060 Hb_009252_060--Hb_019053_060 Hb_002893_110 Hb_002893_110 Hb_009252_060--Hb_002893_110 Hb_000390_090 Hb_000390_090 Hb_009252_060--Hb_000390_090 Hb_001863_120 Hb_001863_120 Hb_009252_060--Hb_001863_120 Hb_007416_050 Hb_007416_050 Hb_009252_060--Hb_007416_050 Hb_000413_060 Hb_000413_060 Hb_009252_060--Hb_000413_060 Hb_000487_260 Hb_000487_260 Hb_019053_060--Hb_000487_260 Hb_000173_250 Hb_000173_250 Hb_019053_060--Hb_000173_250 Hb_001935_100 Hb_001935_100 Hb_019053_060--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_019053_060--Hb_001410_070 Hb_001946_160 Hb_001946_160 Hb_019053_060--Hb_001946_160 Hb_007558_090 Hb_007558_090 Hb_002893_110--Hb_007558_090 Hb_002893_110--Hb_000390_090 Hb_002893_110--Hb_001863_120 Hb_002893_110--Hb_019053_060 Hb_015967_030 Hb_015967_030 Hb_002893_110--Hb_015967_030 Hb_000413_240 Hb_000413_240 Hb_000390_090--Hb_000413_240 Hb_000390_090--Hb_000413_060 Hb_000163_100 Hb_000163_100 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_011053_010 Hb_011053_010 Hb_000390_090--Hb_011053_010 Hb_001541_110 Hb_001541_110 Hb_001863_120--Hb_001541_110 Hb_001863_120--Hb_019053_060 Hb_027472_100 Hb_027472_100 Hb_001863_120--Hb_027472_100 Hb_001863_120--Hb_001946_160 Hb_025194_060 Hb_025194_060 Hb_001863_120--Hb_025194_060 Hb_007416_050--Hb_000390_090 Hb_007416_050--Hb_019053_060 Hb_029866_120 Hb_029866_120 Hb_007416_050--Hb_029866_120 Hb_001369_610 Hb_001369_610 Hb_007416_050--Hb_001369_610 Hb_000877_080 Hb_000877_080 Hb_007416_050--Hb_000877_080 Hb_000413_060--Hb_000163_100 Hb_003556_030 Hb_003556_030 Hb_000413_060--Hb_003556_030 Hb_000413_060--Hb_000413_240 Hb_000413_060--Hb_011053_010 Hb_000413_060--Hb_001541_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.23229 2.49936 14.3198 4.52608 2.93995 3.61159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.35994 13.4882 4.35836 3.3987 12.0345

CAGE analysis