Hb_009252_090

Information

Type transcription factor
Description TF Family: bHLH
Location Contig9252: 98447-99936
Sequence    

Annotation

kegg
ID rcu:RCOM_1510870
description DNA binding protein, putative
nr
ID XP_002511418.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FLI1
description Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1
trembl
ID B9RB43
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1510870 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62628: 98483-100036
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_090 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_012400_020 0.0910582191 - - Spotted leaf protein, putative [Ricinus communis]
3 Hb_000592_070 0.0962888959 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
4 Hb_000069_530 0.0990312446 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
5 Hb_003060_150 0.0999453582 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_004551_010 0.1135467019 - - tryptophan synthase beta chain, putative [Ricinus communis]
7 Hb_031266_020 0.1139351622 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
8 Hb_012496_020 0.1140790321 - - receptor serine/threonine kinase, putative [Ricinus communis]
9 Hb_006873_010 0.1174732301 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_002133_010 0.1182841306 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
11 Hb_005381_010 0.1188096442 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
12 Hb_000256_180 0.1211477033 - - PREDICTED: uncharacterized protein LOC105637589 [Jatropha curcas]
13 Hb_000856_230 0.1267727933 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
14 Hb_001660_080 0.1306901073 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
15 Hb_014700_020 0.1313643277 - - tryptophan synthase beta chain, putative [Ricinus communis]
16 Hb_182167_010 0.1408783448 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]
17 Hb_000438_200 0.1411781846 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
18 Hb_000059_030 0.142006469 - - PREDICTED: chaperone protein dnaJ 10 [Jatropha curcas]
19 Hb_000251_170 0.1428561204 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
20 Hb_160653_010 0.1444571649 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]

Gene co-expression network

sample Hb_009252_090 Hb_009252_090 Hb_012400_020 Hb_012400_020 Hb_009252_090--Hb_012400_020 Hb_000592_070 Hb_000592_070 Hb_009252_090--Hb_000592_070 Hb_000069_530 Hb_000069_530 Hb_009252_090--Hb_000069_530 Hb_003060_150 Hb_003060_150 Hb_009252_090--Hb_003060_150 Hb_004551_010 Hb_004551_010 Hb_009252_090--Hb_004551_010 Hb_031266_020 Hb_031266_020 Hb_009252_090--Hb_031266_020 Hb_012400_020--Hb_000592_070 Hb_021142_030 Hb_021142_030 Hb_012400_020--Hb_021142_030 Hb_046610_010 Hb_046610_010 Hb_012400_020--Hb_046610_010 Hb_000997_130 Hb_000997_130 Hb_012400_020--Hb_000997_130 Hb_002133_010 Hb_002133_010 Hb_012400_020--Hb_002133_010 Hb_000592_070--Hb_002133_010 Hb_000592_070--Hb_000069_530 Hb_000592_070--Hb_031266_020 Hb_000592_070--Hb_003060_150 Hb_005381_010 Hb_005381_010 Hb_000069_530--Hb_005381_010 Hb_000069_530--Hb_003060_150 Hb_121540_010 Hb_121540_010 Hb_000069_530--Hb_121540_010 Hb_077694_010 Hb_077694_010 Hb_000069_530--Hb_077694_010 Hb_001660_080 Hb_001660_080 Hb_000069_530--Hb_001660_080 Hb_003060_150--Hb_121540_010 Hb_003060_150--Hb_005381_010 Hb_028486_010 Hb_028486_010 Hb_003060_150--Hb_028486_010 Hb_003060_150--Hb_001660_080 Hb_004551_010--Hb_031266_020 Hb_000134_260 Hb_000134_260 Hb_004551_010--Hb_000134_260 Hb_004551_010--Hb_001660_080 Hb_002374_200 Hb_002374_200 Hb_004551_010--Hb_002374_200 Hb_000035_140 Hb_000035_140 Hb_004551_010--Hb_000035_140 Hb_002048_100 Hb_002048_100 Hb_031266_020--Hb_002048_100 Hb_031266_020--Hb_002133_010 Hb_031266_020--Hb_000134_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.5615 19.9289 7.70878 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0849588 0 0.118682 0.190514 1.31501

CAGE analysis