Hb_009252_120

Information

Type -
Description -
Location Contig9252: 123094-123552
Sequence    

Annotation

kegg
ID rcu:RCOM_1511300
description hypothetical protein
nr
ID XP_002511421.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZV51
description RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2 SV=1
trembl
ID B9RB46
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1511300 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl56-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006816_160 0.1455902352 - - hypothetical protein RCOM_1434920 [Ricinus communis]
3 Hb_002820_120 0.1589152572 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
4 Hb_003910_020 0.1993272835 - - PREDICTED: reticulon-like protein B13 [Jatropha curcas]
5 Hb_088117_010 0.2210683585 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_162047_010 0.221832344 - - PREDICTED: protein indeterminate-domain 16 [Jatropha curcas]
7 Hb_000813_150 0.2288387545 - - -
8 Hb_000445_010 0.2315940377 - - PREDICTED: uncharacterized protein LOC105113411 [Populus euphratica]
9 Hb_001481_110 0.235963807 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
10 Hb_002393_060 0.2360585389 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
11 Hb_000649_310 0.2391200596 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
12 Hb_004089_010 0.239621844 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
13 Hb_148971_010 0.2406680277 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_010883_220 0.2471548405 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Prunus mume]
15 Hb_004767_010 0.247572714 - - hypothetical protein CICLE_v10010736mg [Citrus clementina]
16 Hb_161954_010 0.2510774791 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
17 Hb_000000_280 0.251212575 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001454_360 0.2542848638 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
19 Hb_008725_190 0.2567332861 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
20 Hb_005694_030 0.2572784038 - - PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Jatropha curcas]

Gene co-expression network

sample Hb_009252_120 Hb_009252_120 Hb_006816_160 Hb_006816_160 Hb_009252_120--Hb_006816_160 Hb_002820_120 Hb_002820_120 Hb_009252_120--Hb_002820_120 Hb_003910_020 Hb_003910_020 Hb_009252_120--Hb_003910_020 Hb_088117_010 Hb_088117_010 Hb_009252_120--Hb_088117_010 Hb_162047_010 Hb_162047_010 Hb_009252_120--Hb_162047_010 Hb_000813_150 Hb_000813_150 Hb_009252_120--Hb_000813_150 Hb_006816_160--Hb_002820_120 Hb_006816_160--Hb_162047_010 Hb_004767_010 Hb_004767_010 Hb_006816_160--Hb_004767_010 Hb_161954_010 Hb_161954_010 Hb_006816_160--Hb_161954_010 Hb_000445_010 Hb_000445_010 Hb_006816_160--Hb_000445_010 Hb_035006_010 Hb_035006_010 Hb_002820_120--Hb_035006_010 Hb_001481_110 Hb_001481_110 Hb_002820_120--Hb_001481_110 Hb_005687_060 Hb_005687_060 Hb_002820_120--Hb_005687_060 Hb_001059_050 Hb_001059_050 Hb_002820_120--Hb_001059_050 Hb_148971_010 Hb_148971_010 Hb_003910_020--Hb_148971_010 Hb_000003_430 Hb_000003_430 Hb_003910_020--Hb_000003_430 Hb_003910_020--Hb_002820_120 Hb_011416_020 Hb_011416_020 Hb_003910_020--Hb_011416_020 Hb_001791_010 Hb_001791_010 Hb_003910_020--Hb_001791_010 Hb_185754_010 Hb_185754_010 Hb_088117_010--Hb_185754_010 Hb_000172_630 Hb_000172_630 Hb_088117_010--Hb_000172_630 Hb_026186_010 Hb_026186_010 Hb_088117_010--Hb_026186_010 Hb_088117_010--Hb_006816_160 Hb_008725_190 Hb_008725_190 Hb_088117_010--Hb_008725_190 Hb_091826_010 Hb_091826_010 Hb_162047_010--Hb_091826_010 Hb_162047_010--Hb_004767_010 Hb_002393_060 Hb_002393_060 Hb_162047_010--Hb_002393_060 Hb_000983_180 Hb_000983_180 Hb_162047_010--Hb_000983_180 Hb_004089_010 Hb_004089_010 Hb_162047_010--Hb_004089_010 Hb_162047_010--Hb_161954_010 Hb_002067_130 Hb_002067_130 Hb_000813_150--Hb_002067_130 Hb_010883_220 Hb_010883_220 Hb_000813_150--Hb_010883_220 Hb_001703_110 Hb_001703_110 Hb_000813_150--Hb_001703_110 Hb_006198_140 Hb_006198_140 Hb_000813_150--Hb_006198_140 Hb_000359_320 Hb_000359_320 Hb_000813_150--Hb_000359_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.48451 0 1.77722 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155058 0.365394 0 0.408766 0

CAGE analysis