Hb_009252_130

Information

Type -
Description -
Location Contig9252: 124536-126627
Sequence    

Annotation

kegg
ID tcc:TCM_012039
description Deletion of SUV3 suppressor 1(I) isoform 1
nr
ID XP_007036179.1
description Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
swissprot
ID Q9XIR8
description Probable 26S proteasome complex subunit sem1-1 OS=Arabidopsis thaliana GN=At1g64750 PE=1 SV=1
trembl
ID A0A061FU35
description Deletion of SUV3 suppressor 1(I) isoform 1 OS=Theobroma cacao GN=TCM_012039 PE=4 SV=1
Gene Ontology
ID GO:0000502
description probable 26s proteasome complex subunit sem1-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62632: 124554-126599
cDNA
(Sanger)
(ID:Location)		 004_G09.ab1: 124947-126599 , 007_D10.ab1: 124934-126599 , 031_P20.ab1: 124952-126599 , 036_L08.ab1: 124936-126599 , 041_K15.ab1: 124952-126599 , 043_N04.ab1: 124952-126599 , 051_C01.ab1: 124957-126597

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_130 0.0 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
2 Hb_000190_060 0.0786793611 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
3 Hb_000815_270 0.0890061231 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001616_020 0.0909127757 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
5 Hb_000563_590 0.0925326792 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
6 Hb_000061_480 0.0926519443 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
7 Hb_001621_180 0.0934399236 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
8 Hb_002234_210 0.0938970249 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
9 Hb_000599_090 0.094410441 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
10 Hb_000025_530 0.0968981847 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
11 Hb_007441_180 0.0972252477 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000144_110 0.0999305038 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
13 Hb_000111_280 0.1041373994 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
14 Hb_011609_180 0.1049187145 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
15 Hb_005590_020 0.1053731675 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
16 Hb_000634_050 0.10538606 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
17 Hb_001104_120 0.1073060075 - - -
18 Hb_005701_020 0.1085880292 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
19 Hb_000531_020 0.1092593819 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
20 Hb_000417_110 0.1101965896 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]

Gene co-expression network

sample Hb_009252_130 Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_009252_130--Hb_000190_060 Hb_000815_270 Hb_000815_270 Hb_009252_130--Hb_000815_270 Hb_001616_020 Hb_001616_020 Hb_009252_130--Hb_001616_020 Hb_000563_590 Hb_000563_590 Hb_009252_130--Hb_000563_590 Hb_000061_480 Hb_000061_480 Hb_009252_130--Hb_000061_480 Hb_001621_180 Hb_001621_180 Hb_009252_130--Hb_001621_180 Hb_001214_030 Hb_001214_030 Hb_000190_060--Hb_001214_030 Hb_000417_110 Hb_000417_110 Hb_000190_060--Hb_000417_110 Hb_000483_160 Hb_000483_160 Hb_000190_060--Hb_000483_160 Hb_000025_530 Hb_000025_530 Hb_000190_060--Hb_000025_530 Hb_003058_070 Hb_003058_070 Hb_000190_060--Hb_003058_070 Hb_000144_110 Hb_000144_110 Hb_000815_270--Hb_000144_110 Hb_000815_270--Hb_000025_530 Hb_000111_280 Hb_000111_280 Hb_000815_270--Hb_000111_280 Hb_009787_040 Hb_009787_040 Hb_000815_270--Hb_009787_040 Hb_005590_020 Hb_005590_020 Hb_000815_270--Hb_005590_020 Hb_011689_050 Hb_011689_050 Hb_001616_020--Hb_011689_050 Hb_004958_050 Hb_004958_050 Hb_001616_020--Hb_004958_050 Hb_002234_210 Hb_002234_210 Hb_001616_020--Hb_002234_210 Hb_001616_020--Hb_000144_110 Hb_151930_020 Hb_151930_020 Hb_001616_020--Hb_151930_020 Hb_001454_330 Hb_001454_330 Hb_000563_590--Hb_001454_330 Hb_001104_120 Hb_001104_120 Hb_000563_590--Hb_001104_120 Hb_000089_130 Hb_000089_130 Hb_000563_590--Hb_000089_130 Hb_011139_020 Hb_011139_020 Hb_000563_590--Hb_011139_020 Hb_000563_590--Hb_001621_180 Hb_183963_020 Hb_183963_020 Hb_000563_590--Hb_183963_020 Hb_000061_480--Hb_000190_060 Hb_171900_050 Hb_171900_050 Hb_000061_480--Hb_171900_050 Hb_000703_140 Hb_000703_140 Hb_000061_480--Hb_000703_140 Hb_000061_480--Hb_001214_030 Hb_000531_020 Hb_000531_020 Hb_000061_480--Hb_000531_020 Hb_001252_140 Hb_001252_140 Hb_001621_180--Hb_001252_140 Hb_007441_180 Hb_007441_180 Hb_001621_180--Hb_007441_180 Hb_005615_070 Hb_005615_070 Hb_001621_180--Hb_005615_070 Hb_001621_180--Hb_001104_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
377.874 41.1461 80.0762 52.6787 323.364 333.091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
501.328 1040.97 352.723 91.9099 56.0858

CAGE analysis