Hb_009265_090

Information

Type -
Description -
Location Contig9265: 119288-122127
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05150g
description POPTRDRAFT_859008; hypothetical protein
nr
ID XP_012091710.1
description PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
swissprot
ID Q66JD1
description ATP synthase mitochondrial F1 complex assembly factor 1 OS=Xenopus tropicalis GN=atpaf1 PE=2 SV=1
trembl
ID A0A067JNF6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21515 PE=4 SV=1
Gene Ontology
ID GO:0005739
description atp synthase mitochondrial f1 complex assembly factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62718: 119174-121775 , PASA_asmbl_62719: 119174-121775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009265_090 0.0 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
2 Hb_002375_090 0.0925949282 - - -
3 Hb_000258_350 0.0943887193 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
4 Hb_000264_090 0.0978365286 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
5 Hb_114893_030 0.1006983294 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
6 Hb_015279_010 0.1056070054 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
7 Hb_000917_110 0.1074577231 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
8 Hb_003126_080 0.1075757142 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
9 Hb_002110_120 0.1079540461 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
10 Hb_002925_030 0.1088175005 - - 40S ribosomal protein S16B [Hevea brasiliensis]
11 Hb_007317_150 0.1094412272 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
12 Hb_004800_070 0.1096243992 - - -
13 Hb_000537_080 0.1121285366 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001979_040 0.1124786509 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
15 Hb_002471_150 0.1128826222 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
16 Hb_172632_090 0.1140784348 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
17 Hb_000009_460 0.1142725848 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000307_090 0.1146604381 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
19 Hb_001269_630 0.1158257861 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
20 Hb_001442_020 0.1180143236 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_009265_090 Hb_009265_090 Hb_002375_090 Hb_002375_090 Hb_009265_090--Hb_002375_090 Hb_000258_350 Hb_000258_350 Hb_009265_090--Hb_000258_350 Hb_000264_090 Hb_000264_090 Hb_009265_090--Hb_000264_090 Hb_114893_030 Hb_114893_030 Hb_009265_090--Hb_114893_030 Hb_015279_010 Hb_015279_010 Hb_009265_090--Hb_015279_010 Hb_000917_110 Hb_000917_110 Hb_009265_090--Hb_000917_110 Hb_000227_230 Hb_000227_230 Hb_002375_090--Hb_000227_230 Hb_002471_150 Hb_002471_150 Hb_002375_090--Hb_002471_150 Hb_003734_140 Hb_003734_140 Hb_002375_090--Hb_003734_140 Hb_002925_030 Hb_002925_030 Hb_002375_090--Hb_002925_030 Hb_089839_020 Hb_089839_020 Hb_002375_090--Hb_089839_020 Hb_003398_120 Hb_003398_120 Hb_002375_090--Hb_003398_120 Hb_000258_350--Hb_114893_030 Hb_000698_030 Hb_000698_030 Hb_000258_350--Hb_000698_030 Hb_011609_100 Hb_011609_100 Hb_000258_350--Hb_011609_100 Hb_172632_090 Hb_172632_090 Hb_000258_350--Hb_172632_090 Hb_003126_080 Hb_003126_080 Hb_000258_350--Hb_003126_080 Hb_002609_280 Hb_002609_280 Hb_000264_090--Hb_002609_280 Hb_001998_050 Hb_001998_050 Hb_000264_090--Hb_001998_050 Hb_000264_090--Hb_002925_030 Hb_155764_020 Hb_155764_020 Hb_000264_090--Hb_155764_020 Hb_000264_090--Hb_003398_120 Hb_001248_080 Hb_001248_080 Hb_000264_090--Hb_001248_080 Hb_002518_080 Hb_002518_080 Hb_114893_030--Hb_002518_080 Hb_022425_040 Hb_022425_040 Hb_114893_030--Hb_022425_040 Hb_114893_030--Hb_000917_110 Hb_000127_180 Hb_000127_180 Hb_114893_030--Hb_000127_180 Hb_114893_030--Hb_015279_010 Hb_015279_010--Hb_022425_040 Hb_003787_010 Hb_003787_010 Hb_015279_010--Hb_003787_010 Hb_000667_070 Hb_000667_070 Hb_015279_010--Hb_000667_070 Hb_004116_190 Hb_004116_190 Hb_015279_010--Hb_004116_190 Hb_000920_110 Hb_000920_110 Hb_015279_010--Hb_000920_110 Hb_011671_100 Hb_011671_100 Hb_015279_010--Hb_011671_100 Hb_046049_010 Hb_046049_010 Hb_000917_110--Hb_046049_010 Hb_009793_010 Hb_009793_010 Hb_000917_110--Hb_009793_010 Hb_000007_100 Hb_000007_100 Hb_000917_110--Hb_000007_100 Hb_004800_230 Hb_004800_230 Hb_000917_110--Hb_004800_230 Hb_000917_110--Hb_015279_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.27015 3.49288 2.76119 1.42006 3.6725 4.10806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.80125 11.5888 4.51373 4.57862 0.746361

CAGE analysis