Hb_009268_030

Information

Type -
Description -
Location Contig9268: 27324-28968
Sequence    

Annotation

kegg
ID pda:8890587
description rps7, PhdaC_p085; 30S ribosomal protein S7
nr
ID YP_784520.1
description ribosomal protein S7 [Piper cenocladum]
swissprot
ID Q06GK0
description 30S ribosomal protein S7, chloroplastic OS=Piper cenocladum GN=rps7-A PE=3 SV=1
trembl
ID Q6EM74
description 30S ribosomal protein S7, chloroplastic OS=Piper betle GN=rps7 PE=3 SV=1
Gene Ontology
ID GO:0003723
description ribosomal protein s7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009268_030 0.0 - - ribosomal protein S7 [Piper cenocladum]
2 Hb_170973_010 0.0001163258 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
3 Hb_141425_010 0.0758642209 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
4 Hb_000987_110 0.0777313902 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
5 Hb_123396_010 0.0826396951 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
6 Hb_004124_010 0.1219823838 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_001124_170 0.1501916823 - - putative retrotransposon protein [Phyllostachys edulis]
8 Hb_002495_050 0.1516919008 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
9 Hb_006933_010 0.1516982073 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_021374_020 0.1993359414 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
11 Hb_154997_010 0.2051794223 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
12 Hb_004078_030 0.2167504975 - - Putative polyprotein, identical [Solanum demissum]
13 Hb_004019_060 0.2167715936 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
14 Hb_008601_020 0.2167776107 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_004989_010 0.2168278351 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
16 Hb_017184_010 0.2173907372 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
17 Hb_001952_080 0.2174941564 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
18 Hb_039316_010 0.2175452445 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
19 Hb_113614_010 0.2175738141 - - hypothetical protein VITISV_001308 [Vitis vinifera]
20 Hb_000029_430 0.2176379109 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_009268_030 Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_009268_030--Hb_170973_010 Hb_141425_010 Hb_141425_010 Hb_009268_030--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_009268_030--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_009268_030--Hb_123396_010 Hb_004124_010 Hb_004124_010 Hb_009268_030--Hb_004124_010 Hb_001124_170 Hb_001124_170 Hb_009268_030--Hb_001124_170 Hb_170973_010--Hb_141425_010 Hb_170973_010--Hb_000987_110 Hb_170973_010--Hb_123396_010 Hb_170973_010--Hb_004124_010 Hb_170973_010--Hb_001124_170 Hb_141425_010--Hb_000987_110 Hb_141425_010--Hb_123396_010 Hb_141425_010--Hb_004124_010 Hb_004078_030 Hb_004078_030 Hb_141425_010--Hb_004078_030 Hb_000987_110--Hb_123396_010 Hb_000987_110--Hb_004124_010 Hb_000987_110--Hb_004078_030 Hb_123396_010--Hb_004124_010 Hb_123396_010--Hb_004078_030 Hb_006933_010 Hb_006933_010 Hb_004124_010--Hb_006933_010 Hb_002495_050 Hb_002495_050 Hb_004124_010--Hb_002495_050 Hb_004124_010--Hb_001124_170 Hb_001124_170--Hb_002495_050 Hb_001124_170--Hb_006933_010 Hb_154997_010 Hb_154997_010 Hb_001124_170--Hb_154997_010 Hb_021374_020 Hb_021374_020 Hb_001124_170--Hb_021374_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.077858 0 0.259523

CAGE analysis