Hb_009268_110

Information

Type -
Description -
Location Contig9268: 45834-53478
Sequence    

Annotation

kegg
ID cit:102611294
description uncharacterized LOC102611294
nr
ID XP_006480387.1
description PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A5BJD2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020846 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009268_110 0.0 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
2 Hb_089491_010 0.0019104916 - - -
3 Hb_136856_010 0.0414422168 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
4 Hb_013727_010 0.0486633982 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
5 Hb_021068_020 0.0594120365 - - -
6 Hb_009066_010 0.0802308592 - - -
7 Hb_068347_020 0.085314105 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_027394_010 0.0853353435 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
9 Hb_005542_020 0.0940336193 - - lupus la ribonucleoprotein, putative [Ricinus communis]
10 Hb_105480_010 0.1175941183 - - -
11 Hb_111332_010 0.1312074148 - - Dihydroneopterin aldolase [Morus notabilis]
12 Hb_076583_010 0.144863023 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
13 Hb_128173_010 0.1571044087 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
14 Hb_007761_010 0.1597678564 - - -
15 Hb_013205_010 0.1620213084 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
16 Hb_064951_010 0.1724065824 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
17 Hb_003636_050 0.1878784783 - - PREDICTED: bark storage protein A-like [Populus euphratica]
18 Hb_010399_020 0.1940305343 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
19 Hb_008151_030 0.1978799716 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_034667_010 0.2042864081 - - -

Gene co-expression network

sample Hb_009268_110 Hb_009268_110 Hb_089491_010 Hb_089491_010 Hb_009268_110--Hb_089491_010 Hb_136856_010 Hb_136856_010 Hb_009268_110--Hb_136856_010 Hb_013727_010 Hb_013727_010 Hb_009268_110--Hb_013727_010 Hb_021068_020 Hb_021068_020 Hb_009268_110--Hb_021068_020 Hb_009066_010 Hb_009066_010 Hb_009268_110--Hb_009066_010 Hb_068347_020 Hb_068347_020 Hb_009268_110--Hb_068347_020 Hb_089491_010--Hb_136856_010 Hb_089491_010--Hb_013727_010 Hb_089491_010--Hb_021068_020 Hb_089491_010--Hb_009066_010 Hb_089491_010--Hb_068347_020 Hb_136856_010--Hb_021068_020 Hb_136856_010--Hb_009066_010 Hb_136856_010--Hb_068347_020 Hb_027394_010 Hb_027394_010 Hb_136856_010--Hb_027394_010 Hb_005542_020 Hb_005542_020 Hb_013727_010--Hb_005542_020 Hb_105480_010 Hb_105480_010 Hb_013727_010--Hb_105480_010 Hb_111332_010 Hb_111332_010 Hb_013727_010--Hb_111332_010 Hb_013727_010--Hb_136856_010 Hb_021068_020--Hb_009066_010 Hb_021068_020--Hb_068347_020 Hb_021068_020--Hb_027394_010 Hb_009066_010--Hb_068347_020 Hb_009066_010--Hb_027394_010 Hb_068347_020--Hb_027394_010 Hb_013205_010 Hb_013205_010 Hb_068347_020--Hb_013205_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0117585 0.0318154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis