Hb_009270_010

Information

Type -
Description -
Location Contig9270: 42491-44836
Sequence    

Annotation

kegg
ID mdm:103421213
description uncharacterized LOC103421213
nr
ID XP_008357465.1
description PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
swissprot
ID -
description -
trembl
ID W9SA21
description DNA polymerase theta OS=Morus notabilis GN=L484_019904 PE=4 SV=1
Gene Ontology
ID GO:0016740
description helicase and polymerase-containing protein tebichi-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009270_010 0.0 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
2 Hb_001117_170 0.0741647982 - - -
3 Hb_020665_010 0.1015333015 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
4 Hb_000005_190 0.1128851991 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
5 Hb_145915_010 0.1143487517 - - PREDICTED: uncharacterized protein LOC105630963 [Jatropha curcas]
6 Hb_188126_010 0.1159005276 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
7 Hb_003498_130 0.1172412692 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
8 Hb_000062_450 0.1252907376 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
9 Hb_006909_010 0.1268593486 - - 5-oxoprolinase, putative [Ricinus communis]
10 Hb_156279_010 0.1269115538 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
11 Hb_003294_090 0.1270111223 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007805_010 0.1310672169 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
13 Hb_001227_080 0.1312376916 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_005801_020 0.1327229753 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
15 Hb_000815_170 0.1335508749 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
16 Hb_000470_080 0.1339231862 - - Caldesmon, putative [Ricinus communis]
17 Hb_001010_070 0.1373433302 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
18 Hb_000318_390 0.1386894879 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
19 Hb_002095_010 0.1403737007 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
20 Hb_164898_010 0.1410581844 - - Cysteine-rich protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_009270_010 Hb_009270_010 Hb_001117_170 Hb_001117_170 Hb_009270_010--Hb_001117_170 Hb_020665_010 Hb_020665_010 Hb_009270_010--Hb_020665_010 Hb_000005_190 Hb_000005_190 Hb_009270_010--Hb_000005_190 Hb_145915_010 Hb_145915_010 Hb_009270_010--Hb_145915_010 Hb_188126_010 Hb_188126_010 Hb_009270_010--Hb_188126_010 Hb_003498_130 Hb_003498_130 Hb_009270_010--Hb_003498_130 Hb_001117_170--Hb_188126_010 Hb_001117_170--Hb_000005_190 Hb_000398_120 Hb_000398_120 Hb_001117_170--Hb_000398_120 Hb_007805_010 Hb_007805_010 Hb_001117_170--Hb_007805_010 Hb_011928_020 Hb_011928_020 Hb_001117_170--Hb_011928_020 Hb_020665_010--Hb_145915_010 Hb_007922_020 Hb_007922_020 Hb_020665_010--Hb_007922_020 Hb_001010_070 Hb_001010_070 Hb_020665_010--Hb_001010_070 Hb_007317_140 Hb_007317_140 Hb_020665_010--Hb_007317_140 Hb_001005_050 Hb_001005_050 Hb_020665_010--Hb_001005_050 Hb_000005_190--Hb_188126_010 Hb_010710_070 Hb_010710_070 Hb_000005_190--Hb_010710_070 Hb_012733_030 Hb_012733_030 Hb_000005_190--Hb_012733_030 Hb_003544_140 Hb_003544_140 Hb_000005_190--Hb_003544_140 Hb_002095_010 Hb_002095_010 Hb_000005_190--Hb_002095_010 Hb_000207_180 Hb_000207_180 Hb_000005_190--Hb_000207_180 Hb_003170_040 Hb_003170_040 Hb_145915_010--Hb_003170_040 Hb_012286_010 Hb_012286_010 Hb_145915_010--Hb_012286_010 Hb_002276_060 Hb_002276_060 Hb_145915_010--Hb_002276_060 Hb_000661_030 Hb_000661_030 Hb_145915_010--Hb_000661_030 Hb_001062_010 Hb_001062_010 Hb_188126_010--Hb_001062_010 Hb_188126_010--Hb_000661_030 Hb_001655_060 Hb_001655_060 Hb_188126_010--Hb_001655_060 Hb_188126_010--Hb_007805_010 Hb_009976_020 Hb_009976_020 Hb_188126_010--Hb_009976_020 Hb_002005_080 Hb_002005_080 Hb_003498_130--Hb_002005_080 Hb_006909_010 Hb_006909_010 Hb_003498_130--Hb_006909_010 Hb_000106_120 Hb_000106_120 Hb_003498_130--Hb_000106_120 Hb_000684_290 Hb_000684_290 Hb_003498_130--Hb_000684_290 Hb_003498_130--Hb_011928_020 Hb_000950_060 Hb_000950_060 Hb_003498_130--Hb_000950_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.449043 0.449614 0.214217 0.166413 0.624215 0.923071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.373312 0.293715 0.752577 1.06168 1.19137

CAGE analysis