Hb_009270_020

Information

Type -
Description -
Location Contig9270: 54987-83835
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00860g
description POPTRDRAFT_578118; hypothetical protein
nr
ID XP_012077460.1
description PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
swissprot
ID Q588V7
description Helicase and polymerase-containing protein TEBICHI OS=Arabidopsis thaliana GN=TEB PE=2 SV=1
trembl
ID B9IKN8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00860g PE=4 SV=2
Gene Ontology
ID GO:0003677
description helicase and polymerase-containing protein tebichi-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62725: 57879-58519 , PASA_asmbl_62727: 67748-68529 , PASA_asmbl_62729: 68992-71038 , PASA_asmbl_62730: 71996-72572 , PASA_asmbl_62731: 81035-81731 , PASA_asmbl_62732: 81781-82005 , PASA_asmbl_62733: 82924-83432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009270_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
2 Hb_001814_030 0.0541996782 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
3 Hb_000579_230 0.0560252845 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
4 Hb_000207_180 0.0585052987 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
5 Hb_007426_110 0.0601630988 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
6 Hb_000590_050 0.0606128452 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
7 Hb_000441_120 0.0609108259 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_002815_030 0.062042561 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
9 Hb_012395_140 0.0635074641 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
10 Hb_003734_010 0.0654781084 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
11 Hb_001473_180 0.0656614491 - - glutathione reductase [Hevea brasiliensis]
12 Hb_001004_060 0.0657749015 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
13 Hb_020378_030 0.0663202872 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
14 Hb_000592_030 0.0671355132 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
15 Hb_001550_060 0.0681443404 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
16 Hb_001062_010 0.0684582711 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
17 Hb_000890_060 0.0684833585 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
18 Hb_000395_070 0.0691092713 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
19 Hb_003913_070 0.0692668706 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
20 Hb_000008_290 0.0693164701 - - PREDICTED: protein SAND [Jatropha curcas]

Gene co-expression network

sample Hb_009270_020 Hb_009270_020 Hb_001814_030 Hb_001814_030 Hb_009270_020--Hb_001814_030 Hb_000579_230 Hb_000579_230 Hb_009270_020--Hb_000579_230 Hb_000207_180 Hb_000207_180 Hb_009270_020--Hb_000207_180 Hb_007426_110 Hb_007426_110 Hb_009270_020--Hb_007426_110 Hb_000590_050 Hb_000590_050 Hb_009270_020--Hb_000590_050 Hb_000441_120 Hb_000441_120 Hb_009270_020--Hb_000441_120 Hb_004586_220 Hb_004586_220 Hb_001814_030--Hb_004586_220 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_020378_030 Hb_020378_030 Hb_001814_030--Hb_020378_030 Hb_000579_230--Hb_012395_140 Hb_002815_030 Hb_002815_030 Hb_000579_230--Hb_002815_030 Hb_000395_070 Hb_000395_070 Hb_000579_230--Hb_000395_070 Hb_104061_020 Hb_104061_020 Hb_000579_230--Hb_104061_020 Hb_004676_010 Hb_004676_010 Hb_000579_230--Hb_004676_010 Hb_000207_180--Hb_000441_120 Hb_017862_020 Hb_017862_020 Hb_000207_180--Hb_017862_020 Hb_000347_070 Hb_000347_070 Hb_000207_180--Hb_000347_070 Hb_006420_040 Hb_006420_040 Hb_000207_180--Hb_006420_040 Hb_000731_270 Hb_000731_270 Hb_000207_180--Hb_000731_270 Hb_006483_110 Hb_006483_110 Hb_007426_110--Hb_006483_110 Hb_028960_020 Hb_028960_020 Hb_007426_110--Hb_028960_020 Hb_008387_020 Hb_008387_020 Hb_007426_110--Hb_008387_020 Hb_002218_090 Hb_002218_090 Hb_007426_110--Hb_002218_090 Hb_002263_020 Hb_002263_020 Hb_007426_110--Hb_002263_020 Hb_001655_030 Hb_001655_030 Hb_007426_110--Hb_001655_030 Hb_000327_270 Hb_000327_270 Hb_000590_050--Hb_000327_270 Hb_000590_050--Hb_020378_030 Hb_000890_060 Hb_000890_060 Hb_000590_050--Hb_000890_060 Hb_000592_030 Hb_000592_030 Hb_000590_050--Hb_000592_030 Hb_001004_060 Hb_001004_060 Hb_000590_050--Hb_001004_060 Hb_000441_120--Hb_006420_040 Hb_000165_040 Hb_000165_040 Hb_000441_120--Hb_000165_040 Hb_003206_130 Hb_003206_130 Hb_000441_120--Hb_003206_130 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.59511 1.79925 1.23026 1.19027 1.64008 1.67506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35605 1.10555 1.45257 2.20233 1.99215

CAGE analysis