Hb_009288_010

Information

Type desease resistance
Description Gene Name: Clp_N
Location Contig9288: 3376-8962
Sequence    

Annotation

kegg
ID rcu:RCOM_1502950
description ERD1 protein, chloroplast precursor, putative
nr
ID XP_002511055.1
description ERD1 protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P42762
description Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana GN=CLPD PE=1 SV=1
trembl
ID B9RA30
description ERD1 protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1502950 PE=3 SV=1
Gene Ontology
ID GO:0005524
description erd1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62789: 3736-8935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009288_010 0.0 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_002686_230 0.062206291 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_006970_050 0.0652770567 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
4 Hb_002272_030 0.0703407372 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
5 Hb_002259_170 0.0722851635 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
6 Hb_006100_020 0.0741275006 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
7 Hb_002042_050 0.0783284287 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
8 Hb_000304_080 0.0810361334 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
9 Hb_010407_080 0.0827539424 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
10 Hb_000656_390 0.0835159125 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
11 Hb_000169_020 0.0854085169 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
12 Hb_007839_020 0.0855892491 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000137_010 0.0871139925 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
14 Hb_000567_230 0.0874035194 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
15 Hb_022425_060 0.0879698071 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
16 Hb_000452_030 0.0879988755 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
17 Hb_033312_130 0.0880606068 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
18 Hb_000340_040 0.0893041323 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
19 Hb_020178_040 0.0897915831 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004774_090 0.0905911741 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]

Gene co-expression network

sample Hb_009288_010 Hb_009288_010 Hb_002686_230 Hb_002686_230 Hb_009288_010--Hb_002686_230 Hb_006970_050 Hb_006970_050 Hb_009288_010--Hb_006970_050 Hb_002272_030 Hb_002272_030 Hb_009288_010--Hb_002272_030 Hb_002259_170 Hb_002259_170 Hb_009288_010--Hb_002259_170 Hb_006100_020 Hb_006100_020 Hb_009288_010--Hb_006100_020 Hb_002042_050 Hb_002042_050 Hb_009288_010--Hb_002042_050 Hb_010407_080 Hb_010407_080 Hb_002686_230--Hb_010407_080 Hb_009658_030 Hb_009658_030 Hb_002686_230--Hb_009658_030 Hb_033312_130 Hb_033312_130 Hb_002686_230--Hb_033312_130 Hb_001008_130 Hb_001008_130 Hb_002686_230--Hb_001008_130 Hb_022425_060 Hb_022425_060 Hb_002686_230--Hb_022425_060 Hb_006970_050--Hb_002272_030 Hb_000656_390 Hb_000656_390 Hb_006970_050--Hb_000656_390 Hb_000490_060 Hb_000490_060 Hb_006970_050--Hb_000490_060 Hb_006970_050--Hb_002686_230 Hb_006970_050--Hb_006100_020 Hb_020178_040 Hb_020178_040 Hb_002272_030--Hb_020178_040 Hb_002272_030--Hb_002042_050 Hb_000567_230 Hb_000567_230 Hb_002272_030--Hb_000567_230 Hb_001723_100 Hb_001723_100 Hb_002272_030--Hb_001723_100 Hb_002830_010 Hb_002830_010 Hb_002272_030--Hb_002830_010 Hb_000452_030 Hb_000452_030 Hb_002259_170--Hb_000452_030 Hb_001269_370 Hb_001269_370 Hb_002259_170--Hb_001269_370 Hb_001511_090 Hb_001511_090 Hb_002259_170--Hb_001511_090 Hb_000506_110 Hb_000506_110 Hb_002259_170--Hb_000506_110 Hb_000137_010 Hb_000137_010 Hb_002259_170--Hb_000137_010 Hb_006100_020--Hb_002042_050 Hb_006100_020--Hb_033312_130 Hb_001141_240 Hb_001141_240 Hb_006100_020--Hb_001141_240 Hb_048476_080 Hb_048476_080 Hb_006100_020--Hb_048476_080 Hb_006100_020--Hb_001008_130 Hb_000169_020 Hb_000169_020 Hb_006100_020--Hb_000169_020 Hb_002042_050--Hb_020178_040 Hb_000243_260 Hb_000243_260 Hb_002042_050--Hb_000243_260 Hb_002042_050--Hb_000567_230 Hb_001817_170 Hb_001817_170 Hb_002042_050--Hb_001817_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.91545 27.5139 21.4346 20.3045 7.66641 7.71492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.88124 12.2043 14.1333 13.532 22.7574

CAGE analysis