Hb_009296_020

Information

Type desease resistance
Description Gene Name: ATP-synt_ab_N
Location Contig9296: 25127-30667
Sequence    

Annotation

kegg
ID pmum:103338731
description ATP synthase subunit beta, mitochondrial-like
nr
ID XP_012066038.1
description PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
swissprot
ID P19023
description ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1
trembl
ID A0A067LEH6
description ATP synthase subunit beta OS=Jatropha curcas GN=JCGZ_06560 PE=3 SV=1
Gene Ontology
ID GO:0000275
description atp synthase subunit mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62798: 25106-30641
cDNA
(Sanger)
(ID:Location)		 014_J16.ab1: 29108-30613 , 018_J11.ab1: 29133-30639 , 046_F11.ab1: 28544-30613 , 051_H13.ab1: 29156-30638

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009296_020 0.0 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
2 Hb_003680_220 0.0712942067 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
3 Hb_000230_530 0.0750016752 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000510_190 0.0845119007 - - glutathione reductase [Hevea brasiliensis]
5 Hb_005854_040 0.0890901291 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002687_200 0.0900646318 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001677_100 0.0937687422 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
8 Hb_002849_050 0.0942038408 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
9 Hb_070624_010 0.0950395206 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
10 Hb_001434_020 0.0966376315 - - hypothetical protein RCOM_0841800 [Ricinus communis]
11 Hb_003490_060 0.0978316159 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
12 Hb_001504_060 0.0982084373 - - PREDICTED: nuclear pore complex protein NUP93A-like [Jatropha curcas]
13 Hb_000098_180 0.0984518727 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
14 Hb_008725_270 0.0989479693 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
15 Hb_101334_020 0.0993401638 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
16 Hb_000500_220 0.0998075563 - - PREDICTED: intersectin-1 [Jatropha curcas]
17 Hb_002010_090 0.1002282377 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
18 Hb_000414_080 0.1010385934 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
19 Hb_000260_400 0.1015252256 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
20 Hb_002627_040 0.1016435078 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_009296_020 Hb_009296_020 Hb_003680_220 Hb_003680_220 Hb_009296_020--Hb_003680_220 Hb_000230_530 Hb_000230_530 Hb_009296_020--Hb_000230_530 Hb_000510_190 Hb_000510_190 Hb_009296_020--Hb_000510_190 Hb_005854_040 Hb_005854_040 Hb_009296_020--Hb_005854_040 Hb_002687_200 Hb_002687_200 Hb_009296_020--Hb_002687_200 Hb_001677_100 Hb_001677_100 Hb_009296_020--Hb_001677_100 Hb_008725_270 Hb_008725_270 Hb_003680_220--Hb_008725_270 Hb_003680_220--Hb_002687_200 Hb_000926_060 Hb_000926_060 Hb_003680_220--Hb_000926_060 Hb_000500_220 Hb_000500_220 Hb_003680_220--Hb_000500_220 Hb_000007_090 Hb_000007_090 Hb_003680_220--Hb_000007_090 Hb_101334_020 Hb_101334_020 Hb_000230_530--Hb_101334_020 Hb_002010_090 Hb_002010_090 Hb_000230_530--Hb_002010_090 Hb_000594_060 Hb_000594_060 Hb_000230_530--Hb_000594_060 Hb_000230_530--Hb_000510_190 Hb_000496_130 Hb_000496_130 Hb_000230_530--Hb_000496_130 Hb_000487_370 Hb_000487_370 Hb_000510_190--Hb_000487_370 Hb_000414_080 Hb_000414_080 Hb_000510_190--Hb_000414_080 Hb_002828_060 Hb_002828_060 Hb_000510_190--Hb_002828_060 Hb_002249_080 Hb_002249_080 Hb_000510_190--Hb_002249_080 Hb_003490_060 Hb_003490_060 Hb_000510_190--Hb_003490_060 Hb_000027_200 Hb_000027_200 Hb_005854_040--Hb_000027_200 Hb_007317_020 Hb_007317_020 Hb_005854_040--Hb_007317_020 Hb_005854_040--Hb_002687_200 Hb_021977_010 Hb_021977_010 Hb_005854_040--Hb_021977_010 Hb_001226_130 Hb_001226_130 Hb_005854_040--Hb_001226_130 Hb_015884_020 Hb_015884_020 Hb_005854_040--Hb_015884_020 Hb_002687_200--Hb_015884_020 Hb_002687_200--Hb_000007_090 Hb_002687_200--Hb_000027_200 Hb_002552_040 Hb_002552_040 Hb_002687_200--Hb_002552_040 Hb_002942_230 Hb_002942_230 Hb_002687_200--Hb_002942_230 Hb_004297_090 Hb_004297_090 Hb_001677_100--Hb_004297_090 Hb_001434_020 Hb_001434_020 Hb_001677_100--Hb_001434_020 Hb_000260_400 Hb_000260_400 Hb_001677_100--Hb_000260_400 Hb_011214_110 Hb_011214_110 Hb_001677_100--Hb_011214_110 Hb_002849_050 Hb_002849_050 Hb_001677_100--Hb_002849_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.12192 24.06 60.6705 48.2864 10.8355 10.4811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.10317 8.10411 12.7979 42.8225 53.6834

CAGE analysis