Hb_009296_030

Information

Type -
Description -
Location Contig9296: 31553-33381
Sequence    

Annotation

kegg
ID pop:POPTR_0012s04760g
description POPTRDRAFT_823277; hypothetical protein
nr
ID XP_012072560.1
description PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05352 PE=4 SV=1
Gene Ontology
ID GO:0006796
description microbial collagenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62799: 31585-33625 , PASA_asmbl_62800: 32634-32935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009296_030 0.0 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
2 Hb_002477_020 0.0451134194 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
3 Hb_022137_050 0.0916418921 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
4 Hb_000317_180 0.0991578577 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
5 Hb_134949_010 0.1009664729 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
6 Hb_000856_280 0.1089480834 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
7 Hb_006472_040 0.1157372962 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
8 Hb_001195_290 0.115952692 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
9 Hb_000803_170 0.1170501874 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
10 Hb_009393_130 0.1181751578 - - PREDICTED: uncharacterized protein LOC105638053 isoform X4 [Jatropha curcas]
11 Hb_010557_010 0.1185707807 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
12 Hb_000442_070 0.1209858489 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
13 Hb_003605_060 0.1221646916 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
14 Hb_002811_250 0.1242794694 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
15 Hb_000089_140 0.1255478409 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
16 Hb_007803_040 0.1271353207 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
17 Hb_091433_050 0.1272371704 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
18 Hb_000019_080 0.1294411427 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
19 Hb_011282_040 0.130203064 - - Sec14 cytosolic factor, putative [Ricinus communis]
20 Hb_002485_050 0.1313609242 - - PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_009296_030 Hb_009296_030 Hb_002477_020 Hb_002477_020 Hb_009296_030--Hb_002477_020 Hb_022137_050 Hb_022137_050 Hb_009296_030--Hb_022137_050 Hb_000317_180 Hb_000317_180 Hb_009296_030--Hb_000317_180 Hb_134949_010 Hb_134949_010 Hb_009296_030--Hb_134949_010 Hb_000856_280 Hb_000856_280 Hb_009296_030--Hb_000856_280 Hb_006472_040 Hb_006472_040 Hb_009296_030--Hb_006472_040 Hb_002477_020--Hb_000317_180 Hb_002477_020--Hb_022137_050 Hb_002477_020--Hb_134949_010 Hb_001195_290 Hb_001195_290 Hb_002477_020--Hb_001195_290 Hb_000029_330 Hb_000029_330 Hb_002477_020--Hb_000029_330 Hb_015141_010 Hb_015141_010 Hb_022137_050--Hb_015141_010 Hb_002170_080 Hb_002170_080 Hb_022137_050--Hb_002170_080 Hb_000352_280 Hb_000352_280 Hb_022137_050--Hb_000352_280 Hb_022137_050--Hb_006472_040 Hb_000089_140 Hb_000089_140 Hb_000317_180--Hb_000089_140 Hb_000317_180--Hb_000029_330 Hb_000803_170 Hb_000803_170 Hb_000317_180--Hb_000803_170 Hb_001266_160 Hb_001266_160 Hb_000317_180--Hb_001266_160 Hb_002071_030 Hb_002071_030 Hb_134949_010--Hb_002071_030 Hb_001517_010 Hb_001517_010 Hb_134949_010--Hb_001517_010 Hb_134949_010--Hb_001195_290 Hb_134949_010--Hb_000029_330 Hb_134949_010--Hb_000317_180 Hb_003605_060 Hb_003605_060 Hb_000856_280--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_000856_280--Hb_002485_050 Hb_007803_040 Hb_007803_040 Hb_000856_280--Hb_007803_040 Hb_005523_040 Hb_005523_040 Hb_000856_280--Hb_005523_040 Hb_005210_010 Hb_005210_010 Hb_000856_280--Hb_005210_010 Hb_000856_280--Hb_001195_290 Hb_008112_020 Hb_008112_020 Hb_006472_040--Hb_008112_020 Hb_006472_040--Hb_001195_290 Hb_000679_320 Hb_000679_320 Hb_006472_040--Hb_000679_320 Hb_169383_010 Hb_169383_010 Hb_006472_040--Hb_169383_010 Hb_006472_040--Hb_000317_180 Hb_009393_140 Hb_009393_140 Hb_006472_040--Hb_009393_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.30788 2.0527 24.4609 12.0394 0.32948 1.57554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22403 3.87603 1.46465 2.84264 49.0806

CAGE analysis