Hb_009296_040

Information

Type -
Description -
Location Contig9296: 38195-77059
Sequence    

Annotation

kegg
ID csv:101224564
description uncharacterized LOC101224564
nr
ID XP_010095596.1
description hypothetical protein L484_007435 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9R9Z8
description Uncharacterized protein OS=Morus notabilis GN=L484_007435 PE=4 SV=1
Gene Ontology
ID GO:0005886
description wd-40 repeat family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62801: 38103-77046 , PASA_asmbl_62802: 38103-77046 , PASA_asmbl_62803: 42236-42485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009296_040 0.0 - - hypothetical protein L484_007435 [Morus notabilis]
2 Hb_000140_210 0.0529531677 - - sec10, putative [Ricinus communis]
3 Hb_011016_050 0.0562114521 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
4 Hb_010142_020 0.0594386908 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000028_390 0.0615995606 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
6 Hb_000537_050 0.0618094499 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
7 Hb_000614_240 0.0630333699 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
8 Hb_004019_120 0.0635931167 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
9 Hb_004679_030 0.0641324051 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
10 Hb_003544_050 0.0663698781 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
11 Hb_000011_060 0.0675222811 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
12 Hb_000230_260 0.0676491537 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
13 Hb_000069_120 0.068803027 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
14 Hb_000261_480 0.0690951847 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
15 Hb_002099_080 0.0694282331 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
16 Hb_001105_020 0.0697562836 - - expressed protein, putative [Ricinus communis]
17 Hb_001377_350 0.0699764373 - - PREDICTED: exportin-2 [Jatropha curcas]
18 Hb_001440_030 0.0702064722 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
19 Hb_001876_010 0.0704956305 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
20 Hb_000592_030 0.0712565874 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_009296_040 Hb_009296_040 Hb_000140_210 Hb_000140_210 Hb_009296_040--Hb_000140_210 Hb_011016_050 Hb_011016_050 Hb_009296_040--Hb_011016_050 Hb_010142_020 Hb_010142_020 Hb_009296_040--Hb_010142_020 Hb_000028_390 Hb_000028_390 Hb_009296_040--Hb_000028_390 Hb_000537_050 Hb_000537_050 Hb_009296_040--Hb_000537_050 Hb_000614_240 Hb_000614_240 Hb_009296_040--Hb_000614_240 Hb_003544_050 Hb_003544_050 Hb_000140_210--Hb_003544_050 Hb_000140_210--Hb_011016_050 Hb_000066_170 Hb_000066_170 Hb_000140_210--Hb_000066_170 Hb_085781_020 Hb_085781_020 Hb_000140_210--Hb_085781_020 Hb_000140_210--Hb_000028_390 Hb_011016_050--Hb_000614_240 Hb_004030_080 Hb_004030_080 Hb_011016_050--Hb_004030_080 Hb_011016_050--Hb_010142_020 Hb_000083_120 Hb_000083_120 Hb_011016_050--Hb_000083_120 Hb_011063_050 Hb_011063_050 Hb_010142_020--Hb_011063_050 Hb_002989_020 Hb_002989_020 Hb_010142_020--Hb_002989_020 Hb_010142_020--Hb_000614_240 Hb_001500_140 Hb_001500_140 Hb_010142_020--Hb_001500_140 Hb_000140_290 Hb_000140_290 Hb_010142_020--Hb_000140_290 Hb_003683_020 Hb_003683_020 Hb_010142_020--Hb_003683_020 Hb_001876_010 Hb_001876_010 Hb_000028_390--Hb_001876_010 Hb_000174_180 Hb_000174_180 Hb_000028_390--Hb_000174_180 Hb_004449_080 Hb_004449_080 Hb_000028_390--Hb_004449_080 Hb_000011_060 Hb_000011_060 Hb_000028_390--Hb_000011_060 Hb_004586_220 Hb_004586_220 Hb_000537_050--Hb_004586_220 Hb_000592_030 Hb_000592_030 Hb_000537_050--Hb_000592_030 Hb_020378_030 Hb_020378_030 Hb_000537_050--Hb_020378_030 Hb_012092_060 Hb_012092_060 Hb_000537_050--Hb_012092_060 Hb_002890_130 Hb_002890_130 Hb_000537_050--Hb_002890_130 Hb_001999_310 Hb_001999_310 Hb_000614_240--Hb_001999_310 Hb_000111_290 Hb_000111_290 Hb_000614_240--Hb_000111_290 Hb_000614_240--Hb_000011_060 Hb_002456_010 Hb_002456_010 Hb_000614_240--Hb_002456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.92831 10.0319 6.1798 12.6708 8.59337 11.1107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.14419 7.00036 12.4766 14.89 13.4696

CAGE analysis