Hb_009296_060

Information

Type -
Description -
Location Contig9296: 77754-79462
Sequence    

Annotation

kegg
ID rcu:RCOM_0243930
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID XP_002532525.1
description glutathione s-transferase, putative [Ricinus communis]
swissprot
ID P32110
description Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1
trembl
ID B9T2Q6
description Glutathione s-transferase, putative OS=Ricinus communis GN=RCOM_0243930 PE=3 SV=1
Gene Ontology
ID GO:0004364
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62806: 77776-79286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009296_060 0.0 - - glutathione s-transferase, putative [Ricinus communis]
2 Hb_000343_040 0.1195384535 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
3 Hb_000753_180 0.1205971996 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
4 Hb_001439_040 0.1317344929 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
5 Hb_000699_050 0.1324718608 - - -
6 Hb_005333_210 0.1333325092 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
7 Hb_011440_010 0.1334453876 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
8 Hb_106321_010 0.1397246282 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
9 Hb_005168_030 0.1425702457 - - unknown [Zea mays]
10 Hb_123560_020 0.14640777 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
11 Hb_170878_070 0.1464889529 - - hypothetical protein EUGRSUZ_L008133, partial [Eucalyptus grandis]
12 Hb_000566_110 0.1493481831 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
13 Hb_001300_140 0.1507159414 - - -
14 Hb_000844_090 0.1512292468 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
15 Hb_001358_120 0.1520139043 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
16 Hb_002304_190 0.1520916493 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
17 Hb_006916_020 0.1537373396 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
18 Hb_000473_070 0.1541990373 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
19 Hb_000336_280 0.1546804814 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
20 Hb_004586_110 0.155428737 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_009296_060 Hb_009296_060 Hb_000343_040 Hb_000343_040 Hb_009296_060--Hb_000343_040 Hb_000753_180 Hb_000753_180 Hb_009296_060--Hb_000753_180 Hb_001439_040 Hb_001439_040 Hb_009296_060--Hb_001439_040 Hb_000699_050 Hb_000699_050 Hb_009296_060--Hb_000699_050 Hb_005333_210 Hb_005333_210 Hb_009296_060--Hb_005333_210 Hb_011440_010 Hb_011440_010 Hb_009296_060--Hb_011440_010 Hb_000457_130 Hb_000457_130 Hb_000343_040--Hb_000457_130 Hb_000343_040--Hb_000699_050 Hb_006916_020 Hb_006916_020 Hb_000343_040--Hb_006916_020 Hb_000844_090 Hb_000844_090 Hb_000343_040--Hb_000844_090 Hb_000566_110 Hb_000566_110 Hb_000343_040--Hb_000566_110 Hb_001300_140 Hb_001300_140 Hb_000753_180--Hb_001300_140 Hb_000753_180--Hb_006916_020 Hb_000753_180--Hb_011440_010 Hb_000836_260 Hb_000836_260 Hb_000753_180--Hb_000836_260 Hb_000753_180--Hb_005333_210 Hb_009150_060 Hb_009150_060 Hb_000753_180--Hb_009150_060 Hb_001832_110 Hb_001832_110 Hb_001439_040--Hb_001832_110 Hb_001226_100 Hb_001226_100 Hb_001439_040--Hb_001226_100 Hb_002304_190 Hb_002304_190 Hb_001439_040--Hb_002304_190 Hb_000336_280 Hb_000336_280 Hb_001439_040--Hb_000336_280 Hb_002685_100 Hb_002685_100 Hb_001439_040--Hb_002685_100 Hb_000215_130 Hb_000215_130 Hb_001439_040--Hb_000215_130 Hb_000473_070 Hb_000473_070 Hb_000699_050--Hb_000473_070 Hb_000699_050--Hb_000457_130 Hb_001366_050 Hb_001366_050 Hb_000699_050--Hb_001366_050 Hb_000699_050--Hb_000753_180 Hb_005333_210--Hb_000336_280 Hb_005333_210--Hb_001300_140 Hb_079394_010 Hb_079394_010 Hb_005333_210--Hb_079394_010 Hb_005333_210--Hb_000215_130 Hb_001004_130 Hb_001004_130 Hb_005333_210--Hb_001004_130 Hb_011440_010--Hb_001300_140 Hb_123560_020 Hb_123560_020 Hb_011440_010--Hb_123560_020 Hb_011440_010--Hb_009150_060 Hb_005168_030 Hb_005168_030 Hb_011440_010--Hb_005168_030 Hb_001358_120 Hb_001358_120 Hb_011440_010--Hb_001358_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.82754 11.017 3.34008 0.0226718 0.0502224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.517723 0.692207 0.149723 20.051 6.57244

CAGE analysis