Hb_009302_010

Information

Type -
Description -
Location Contig9302: 8037-11184
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DNQ8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009302_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_004607_130 0.1873588079 - - -
3 Hb_001124_030 0.2399179949 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
4 Hb_011942_030 0.2589052964 - - -
5 Hb_004117_250 0.2806194403 - - PREDICTED: expansin-A8-like [Populus euphratica]
6 Hb_023024_010 0.2813435924 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
7 Hb_010531_060 0.2853744728 - - hypothetical protein B456_010G209400, partial [Gossypium raimondii]
8 Hb_082219_010 0.2911939973 - - Os03g0264300, partial [Oryza sativa Japonica Group]
9 Hb_012264_010 0.2931397987 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
10 Hb_003292_060 0.2945250509 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
11 Hb_114250_010 0.2963772475 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005269_010 0.2984234983 - - -
13 Hb_049884_010 0.304779106 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_002269_010 0.30957959 - - PREDICTED: WAT1-related protein At4g15540-like [Jatropha curcas]
15 Hb_088084_010 0.3102005551 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
16 Hb_001703_100 0.312281509 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
17 Hb_007333_020 0.3130446734 - - -
18 Hb_004800_210 0.3148789977 - - hypothetical protein POPTR_0007s12780g [Populus trichocarpa]
19 Hb_067197_020 0.3186922595 - - -
20 Hb_010896_010 0.3186966845 - - -

Gene co-expression network

sample Hb_009302_010 Hb_009302_010 Hb_004607_130 Hb_004607_130 Hb_009302_010--Hb_004607_130 Hb_001124_030 Hb_001124_030 Hb_009302_010--Hb_001124_030 Hb_011942_030 Hb_011942_030 Hb_009302_010--Hb_011942_030 Hb_004117_250 Hb_004117_250 Hb_009302_010--Hb_004117_250 Hb_023024_010 Hb_023024_010 Hb_009302_010--Hb_023024_010 Hb_010531_060 Hb_010531_060 Hb_009302_010--Hb_010531_060 Hb_000878_150 Hb_000878_150 Hb_004607_130--Hb_000878_150 Hb_051450_010 Hb_051450_010 Hb_004607_130--Hb_051450_010 Hb_000890_190 Hb_000890_190 Hb_004607_130--Hb_000890_190 Hb_168039_020 Hb_168039_020 Hb_004607_130--Hb_168039_020 Hb_003683_090 Hb_003683_090 Hb_004607_130--Hb_003683_090 Hb_003292_060 Hb_003292_060 Hb_001124_030--Hb_003292_060 Hb_002234_230 Hb_002234_230 Hb_001124_030--Hb_002234_230 Hb_000589_370 Hb_000589_370 Hb_001124_030--Hb_000589_370 Hb_004968_010 Hb_004968_010 Hb_001124_030--Hb_004968_010 Hb_001124_030--Hb_004117_250 Hb_002897_020 Hb_002897_020 Hb_011942_030--Hb_002897_020 Hb_039385_010 Hb_039385_010 Hb_011942_030--Hb_039385_010 Hb_011903_030 Hb_011903_030 Hb_011942_030--Hb_011903_030 Hb_000742_050 Hb_000742_050 Hb_011942_030--Hb_000742_050 Hb_000629_050 Hb_000629_050 Hb_011942_030--Hb_000629_050 Hb_005417_020 Hb_005417_020 Hb_011942_030--Hb_005417_020 Hb_004524_060 Hb_004524_060 Hb_004117_250--Hb_004524_060 Hb_004117_250--Hb_000589_370 Hb_004117_250--Hb_003292_060 Hb_004117_250--Hb_002897_020 Hb_000787_010 Hb_000787_010 Hb_004117_250--Hb_000787_010 Hb_049884_010 Hb_049884_010 Hb_004117_250--Hb_049884_010 Hb_023024_010--Hb_010531_060 Hb_082219_010 Hb_082219_010 Hb_023024_010--Hb_082219_010 Hb_005269_010 Hb_005269_010 Hb_023024_010--Hb_005269_010 Hb_002269_010 Hb_002269_010 Hb_023024_010--Hb_002269_010 Hb_001703_100 Hb_001703_100 Hb_023024_010--Hb_001703_100 Hb_123056_010 Hb_123056_010 Hb_023024_010--Hb_123056_010 Hb_010531_060--Hb_005269_010 Hb_010531_060--Hb_002269_010 Hb_010531_060--Hb_001703_100 Hb_010531_060--Hb_123056_010 Hb_010531_060--Hb_082219_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0220719 0.0773268 0.0174785 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis