Hb_009314_010

Information

Type -
Description -
Location Contig9314: 22747-24321
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24160g
description POPTRDRAFT_653855; hypothetical protein
nr
ID XP_012077244.1
description PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
swissprot
ID Q96MB7
description Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1
trembl
ID A0A067KQG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009314_010 0.0 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
2 Hb_000161_150 0.1096405938 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
3 Hb_000432_050 0.1257981323 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
4 Hb_006816_450 0.1340901295 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002756_020 0.1392791814 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
6 Hb_005224_010 0.1393870849 - - glycine-rich protein [Bruguiera gymnorhiza]
7 Hb_000771_130 0.1500180715 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
8 Hb_000016_190 0.1565791035 - - ABC transporter B family member 28 [Glycine soja]
9 Hb_000141_030 0.1616880127 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
10 Hb_000316_020 0.1629865099 - - protein binding protein, putative [Ricinus communis]
11 Hb_017434_050 0.1640604736 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
12 Hb_000327_220 0.1673144713 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
13 Hb_000723_190 0.1707374568 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
14 Hb_001159_080 0.1714020862 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
15 Hb_001538_140 0.1715596922 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
16 Hb_005614_050 0.1718757594 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
17 Hb_004429_070 0.172545782 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
18 Hb_000562_040 0.1726519203 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
19 Hb_029510_040 0.1752580069 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
20 Hb_000196_080 0.1790365526 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009314_010 Hb_009314_010 Hb_000161_150 Hb_000161_150 Hb_009314_010--Hb_000161_150 Hb_000432_050 Hb_000432_050 Hb_009314_010--Hb_000432_050 Hb_006816_450 Hb_006816_450 Hb_009314_010--Hb_006816_450 Hb_002756_020 Hb_002756_020 Hb_009314_010--Hb_002756_020 Hb_005224_010 Hb_005224_010 Hb_009314_010--Hb_005224_010 Hb_000771_130 Hb_000771_130 Hb_009314_010--Hb_000771_130 Hb_000161_150--Hb_000771_130 Hb_000161_150--Hb_002756_020 Hb_000316_020 Hb_000316_020 Hb_000161_150--Hb_000316_020 Hb_000141_030 Hb_000141_030 Hb_000161_150--Hb_000141_030 Hb_000161_150--Hb_000432_050 Hb_001538_140 Hb_001538_140 Hb_000432_050--Hb_001538_140 Hb_029510_040 Hb_029510_040 Hb_000432_050--Hb_029510_040 Hb_005839_110 Hb_005839_110 Hb_000432_050--Hb_005839_110 Hb_000432_050--Hb_002756_020 Hb_000432_050--Hb_000771_130 Hb_006816_450--Hb_002756_020 Hb_004410_100 Hb_004410_100 Hb_006816_450--Hb_004410_100 Hb_007161_010 Hb_007161_010 Hb_006816_450--Hb_007161_010 Hb_001959_160 Hb_001959_160 Hb_006816_450--Hb_001959_160 Hb_002290_040 Hb_002290_040 Hb_006816_450--Hb_002290_040 Hb_004429_070 Hb_004429_070 Hb_002756_020--Hb_004429_070 Hb_002756_020--Hb_002290_040 Hb_000327_220 Hb_000327_220 Hb_002756_020--Hb_000327_220 Hb_005614_050 Hb_005614_050 Hb_002756_020--Hb_005614_050 Hb_003551_050 Hb_003551_050 Hb_002756_020--Hb_003551_050 Hb_005224_010--Hb_000327_220 Hb_002239_060 Hb_002239_060 Hb_005224_010--Hb_002239_060 Hb_001159_080 Hb_001159_080 Hb_005224_010--Hb_001159_080 Hb_005489_100 Hb_005489_100 Hb_005224_010--Hb_005489_100 Hb_003972_080 Hb_003972_080 Hb_005224_010--Hb_003972_080 Hb_000016_190 Hb_000016_190 Hb_000771_130--Hb_000016_190 Hb_000771_130--Hb_005839_110 Hb_000562_040 Hb_000562_040 Hb_000771_130--Hb_000562_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.08127 2.4661 0.809935 1.12911 1.52005 1.42123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.8883 10.3615 24.4 7.64551 0.584388

CAGE analysis