Hb_009328_020

Information

Type -
Description -
Location Contig9328: 40303-47620
Sequence    

Annotation

kegg
ID rcu:RCOM_0977300
description hypothetical protein
nr
ID XP_002521262.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5J3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0977300 PE=4 SV=1
Gene Ontology
ID GO:0005768
description plant f20m13-60 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62878: 46308-46688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009328_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000181_130 0.0579430748 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000479_250 0.0612328483 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
4 Hb_109000_020 0.0632673228 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
5 Hb_002289_080 0.0807092743 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
6 Hb_001898_210 0.0816355558 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
7 Hb_009898_050 0.0824936338 - - PREDICTED: beta-taxilin [Jatropha curcas]
8 Hb_004109_080 0.0831724924 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
9 Hb_004531_140 0.0831778624 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
10 Hb_006153_070 0.0846155358 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
11 Hb_041290_020 0.0847984112 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
12 Hb_027380_220 0.0849457328 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
13 Hb_005291_050 0.0851573476 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
14 Hb_003025_100 0.0876997657 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
15 Hb_012498_010 0.0883573881 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
16 Hb_000141_080 0.0884165521 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
17 Hb_006275_070 0.0888218708 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
18 Hb_003878_150 0.0890347291 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
19 Hb_008616_050 0.0894350457 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
20 Hb_001366_180 0.0896955471 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_009328_020 Hb_009328_020 Hb_000181_130 Hb_000181_130 Hb_009328_020--Hb_000181_130 Hb_000479_250 Hb_000479_250 Hb_009328_020--Hb_000479_250 Hb_109000_020 Hb_109000_020 Hb_009328_020--Hb_109000_020 Hb_002289_080 Hb_002289_080 Hb_009328_020--Hb_002289_080 Hb_001898_210 Hb_001898_210 Hb_009328_020--Hb_001898_210 Hb_009898_050 Hb_009898_050 Hb_009328_020--Hb_009898_050 Hb_000594_050 Hb_000594_050 Hb_000181_130--Hb_000594_050 Hb_000621_010 Hb_000621_010 Hb_000181_130--Hb_000621_010 Hb_054865_150 Hb_054865_150 Hb_000181_130--Hb_054865_150 Hb_065500_060 Hb_065500_060 Hb_000181_130--Hb_065500_060 Hb_008847_030 Hb_008847_030 Hb_000181_130--Hb_008847_030 Hb_006274_030 Hb_006274_030 Hb_000479_250--Hb_006274_030 Hb_001369_750 Hb_001369_750 Hb_000479_250--Hb_001369_750 Hb_001366_180 Hb_001366_180 Hb_000479_250--Hb_001366_180 Hb_006275_070 Hb_006275_070 Hb_000479_250--Hb_006275_070 Hb_003153_010 Hb_003153_010 Hb_000479_250--Hb_003153_010 Hb_003878_150 Hb_003878_150 Hb_109000_020--Hb_003878_150 Hb_001232_190 Hb_001232_190 Hb_109000_020--Hb_001232_190 Hb_008616_050 Hb_008616_050 Hb_109000_020--Hb_008616_050 Hb_001662_100 Hb_001662_100 Hb_109000_020--Hb_001662_100 Hb_041290_020 Hb_041290_020 Hb_109000_020--Hb_041290_020 Hb_001168_020 Hb_001168_020 Hb_002289_080--Hb_001168_020 Hb_000310_090 Hb_000310_090 Hb_002289_080--Hb_000310_090 Hb_005144_050 Hb_005144_050 Hb_002289_080--Hb_005144_050 Hb_025194_100 Hb_025194_100 Hb_002289_080--Hb_025194_100 Hb_006478_020 Hb_006478_020 Hb_002289_080--Hb_006478_020 Hb_025098_010 Hb_025098_010 Hb_002289_080--Hb_025098_010 Hb_172632_040 Hb_172632_040 Hb_001898_210--Hb_172632_040 Hb_152202_010 Hb_152202_010 Hb_001898_210--Hb_152202_010 Hb_001898_210--Hb_000479_250 Hb_001279_030 Hb_001279_030 Hb_001898_210--Hb_001279_030 Hb_000022_020 Hb_000022_020 Hb_001898_210--Hb_000022_020 Hb_006153_070 Hb_006153_070 Hb_009898_050--Hb_006153_070 Hb_000110_310 Hb_000110_310 Hb_009898_050--Hb_000110_310 Hb_009898_050--Hb_008616_050 Hb_000915_260 Hb_000915_260 Hb_009898_050--Hb_000915_260 Hb_000640_170 Hb_000640_170 Hb_009898_050--Hb_000640_170 Hb_000579_120 Hb_000579_120 Hb_009898_050--Hb_000579_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.7167 2.68912 5.44953 9.2581 5.98921 8.14223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.88795 6.41049 5.92331 5.65852 8.99118

CAGE analysis