Hb_009339_030

Information

Type -
Description -
Location Contig9339: 15055-26510
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04380g
description POPTRDRAFT_251530; MAP KINASE 9 family protein
nr
ID XP_012068439.1
description PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
swissprot
ID Q9LV37
description Mitogen-activated protein kinase 9 OS=Arabidopsis thaliana GN=MPK9 PE=2 SV=2
trembl
ID A0A067KY95
description Mitogen-activated protein kinase OS=Jatropha curcas GN=JCGZ_03628 PE=4 SV=1
Gene Ontology
ID GO:0004707
description mitogen-activated protein kinase 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62922: 15441-17663 , PASA_asmbl_62923: 15724-17489 , PASA_asmbl_62924: 24042-26466
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009339_030 0.0 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
2 Hb_000436_130 0.0592775997 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
3 Hb_001013_030 0.0604607304 - - GTP-binding protein yptv3, putative [Ricinus communis]
4 Hb_000288_030 0.0760606524 - - PREDICTED: syntaxin-32 [Jatropha curcas]
5 Hb_050514_010 0.0775535055 - - hypothetical protein 29 [Hevea brasiliensis]
6 Hb_007416_060 0.0816423597 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
7 Hb_000827_050 0.0841688014 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
8 Hb_000733_180 0.084299732 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
9 Hb_000393_020 0.0847595311 - - lipid binding protein, putative [Ricinus communis]
10 Hb_000928_070 0.0854725368 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
11 Hb_005765_050 0.0865245099 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
12 Hb_004078_040 0.0867145678 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
13 Hb_003540_030 0.087275656 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
14 Hb_000260_030 0.0872861375 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
15 Hb_119600_070 0.0872920122 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
16 Hb_000538_070 0.0879771222 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
17 Hb_000783_020 0.0908324272 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
18 Hb_001300_150 0.0916661407 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
19 Hb_010812_120 0.0930372697 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
20 Hb_001489_080 0.0932347096 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_009339_030 Hb_009339_030 Hb_000436_130 Hb_000436_130 Hb_009339_030--Hb_000436_130 Hb_001013_030 Hb_001013_030 Hb_009339_030--Hb_001013_030 Hb_000288_030 Hb_000288_030 Hb_009339_030--Hb_000288_030 Hb_050514_010 Hb_050514_010 Hb_009339_030--Hb_050514_010 Hb_007416_060 Hb_007416_060 Hb_009339_030--Hb_007416_060 Hb_000827_050 Hb_000827_050 Hb_009339_030--Hb_000827_050 Hb_010883_050 Hb_010883_050 Hb_000436_130--Hb_010883_050 Hb_000733_180 Hb_000733_180 Hb_000436_130--Hb_000733_180 Hb_003697_040 Hb_003697_040 Hb_000436_130--Hb_003697_040 Hb_000436_130--Hb_001013_030 Hb_003053_020 Hb_003053_020 Hb_000436_130--Hb_003053_020 Hb_001013_030--Hb_000733_180 Hb_005765_050 Hb_005765_050 Hb_001013_030--Hb_005765_050 Hb_004889_020 Hb_004889_020 Hb_001013_030--Hb_004889_020 Hb_000676_390 Hb_000676_390 Hb_001013_030--Hb_000676_390 Hb_000928_070 Hb_000928_070 Hb_000288_030--Hb_000928_070 Hb_004109_220 Hb_004109_220 Hb_000288_030--Hb_004109_220 Hb_000003_230 Hb_000003_230 Hb_000288_030--Hb_000003_230 Hb_000925_130 Hb_000925_130 Hb_000288_030--Hb_000925_130 Hb_003582_060 Hb_003582_060 Hb_000288_030--Hb_003582_060 Hb_012022_040 Hb_012022_040 Hb_000288_030--Hb_012022_040 Hb_000260_030 Hb_000260_030 Hb_050514_010--Hb_000260_030 Hb_050514_010--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_050514_010--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_050514_010--Hb_003728_060 Hb_004109_170 Hb_004109_170 Hb_050514_010--Hb_004109_170 Hb_000465_160 Hb_000465_160 Hb_050514_010--Hb_000465_160 Hb_005488_200 Hb_005488_200 Hb_007416_060--Hb_005488_200 Hb_000116_260 Hb_000116_260 Hb_007416_060--Hb_000116_260 Hb_000783_020 Hb_000783_020 Hb_007416_060--Hb_000783_020 Hb_001489_080 Hb_001489_080 Hb_007416_060--Hb_001489_080 Hb_003376_250 Hb_003376_250 Hb_007416_060--Hb_003376_250 Hb_007416_060--Hb_000436_130 Hb_000236_040 Hb_000236_040 Hb_000827_050--Hb_000236_040 Hb_000827_050--Hb_004109_170 Hb_000827_050--Hb_000260_030 Hb_000827_050--Hb_000003_230 Hb_000205_090 Hb_000205_090 Hb_000827_050--Hb_000205_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.51593 3.2476 5.72767 6.13231 3.34979 4.5023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.00276 8.876 11.6805 4.14761 5.80988

CAGE analysis