Hb_009355_040

Information

Type -
Description -
Location Contig9355: 17242-18353
Sequence    

Annotation

kegg
ID rcu:RCOM_0560530
description ATP binding protein, putative (EC:2.7.11.30 2.7.11.25)
nr
ID XP_002520279.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID P35953
description Very low-density lipoprotein receptor OS=Oryctolagus cuniculus GN=VLDLR PE=2 SV=1
trembl
ID B9S2R0
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0560530 PE=4 SV=1
Gene Ontology
ID GO:0000166
description wall-associated receptor kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62993: 17942-18388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009355_040 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_017438_020 0.1813081336 - - -
3 Hb_179022_010 0.1870741561 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_006452_090 0.1877493444 - - PREDICTED: eukaryotic translation initiation factor 5B [Jatropha curcas]
5 Hb_002872_020 0.1878211021 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_007364_010 0.1890743657 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
7 Hb_000206_150 0.1909301048 - - unnamed protein product [Coffea canephora]
8 Hb_000729_050 0.1918073272 - - Pinin, putative [Ricinus communis]
9 Hb_000977_180 0.1926838893 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
10 Hb_001789_210 0.1927970609 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
11 Hb_000270_140 0.1951832762 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
12 Hb_002217_150 0.1957775502 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
13 Hb_000808_180 0.1965004711 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
14 Hb_000504_090 0.1983070099 - - PREDICTED: titin isoform X10 [Jatropha curcas]
15 Hb_005214_160 0.1991755745 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
16 Hb_000413_180 0.2024535934 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
17 Hb_007586_030 0.202909421 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
18 Hb_001152_030 0.2031384583 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
19 Hb_000107_100 0.2039774096 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
20 Hb_001040_170 0.2040364683 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009355_040 Hb_009355_040 Hb_017438_020 Hb_017438_020 Hb_009355_040--Hb_017438_020 Hb_179022_010 Hb_179022_010 Hb_009355_040--Hb_179022_010 Hb_006452_090 Hb_006452_090 Hb_009355_040--Hb_006452_090 Hb_002872_020 Hb_002872_020 Hb_009355_040--Hb_002872_020 Hb_007364_010 Hb_007364_010 Hb_009355_040--Hb_007364_010 Hb_000206_150 Hb_000206_150 Hb_009355_040--Hb_000206_150 Hb_000922_150 Hb_000922_150 Hb_017438_020--Hb_000922_150 Hb_000258_130 Hb_000258_130 Hb_017438_020--Hb_000258_130 Hb_000300_380 Hb_000300_380 Hb_017438_020--Hb_000300_380 Hb_002942_220 Hb_002942_220 Hb_017438_020--Hb_002942_220 Hb_004241_070 Hb_004241_070 Hb_017438_020--Hb_004241_070 Hb_017168_010 Hb_017168_010 Hb_017438_020--Hb_017168_010 Hb_010710_080 Hb_010710_080 Hb_179022_010--Hb_010710_080 Hb_001789_210 Hb_001789_210 Hb_179022_010--Hb_001789_210 Hb_001638_270 Hb_001638_270 Hb_179022_010--Hb_001638_270 Hb_000732_140 Hb_000732_140 Hb_179022_010--Hb_000732_140 Hb_004162_090 Hb_004162_090 Hb_179022_010--Hb_004162_090 Hb_001136_090 Hb_001136_090 Hb_179022_010--Hb_001136_090 Hb_002217_150 Hb_002217_150 Hb_006452_090--Hb_002217_150 Hb_000768_190 Hb_000768_190 Hb_006452_090--Hb_000768_190 Hb_003001_150 Hb_003001_150 Hb_006452_090--Hb_003001_150 Hb_126643_010 Hb_126643_010 Hb_006452_090--Hb_126643_010 Hb_002291_070 Hb_002291_070 Hb_006452_090--Hb_002291_070 Hb_064903_010 Hb_064903_010 Hb_006452_090--Hb_064903_010 Hb_000429_200 Hb_000429_200 Hb_002872_020--Hb_000429_200 Hb_001136_100 Hb_001136_100 Hb_002872_020--Hb_001136_100 Hb_055590_010 Hb_055590_010 Hb_002872_020--Hb_055590_010 Hb_003506_080 Hb_003506_080 Hb_002872_020--Hb_003506_080 Hb_000599_110 Hb_000599_110 Hb_002872_020--Hb_000599_110 Hb_002872_020--Hb_001136_090 Hb_000977_180 Hb_000977_180 Hb_007364_010--Hb_000977_180 Hb_007364_010--Hb_001789_210 Hb_004934_090 Hb_004934_090 Hb_007364_010--Hb_004934_090 Hb_000703_080 Hb_000703_080 Hb_007364_010--Hb_000703_080 Hb_010710_110 Hb_010710_110 Hb_007364_010--Hb_010710_110 Hb_025557_010 Hb_025557_010 Hb_007364_010--Hb_025557_010 Hb_000106_040 Hb_000106_040 Hb_000206_150--Hb_000106_040 Hb_005399_010 Hb_005399_010 Hb_000206_150--Hb_005399_010 Hb_000086_590 Hb_000086_590 Hb_000206_150--Hb_000086_590 Hb_000367_290 Hb_000367_290 Hb_000206_150--Hb_000367_290 Hb_000390_070 Hb_000390_070 Hb_000206_150--Hb_000390_070 Hb_000497_140 Hb_000497_140 Hb_000206_150--Hb_000497_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.756907 0.46551 0.0180102 0 1.36786 0.643006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.440523 0.303141 0.555427 0.575675 0.528918

CAGE analysis