Hb_009367_070

Information

Type -
Description -
Location Contig9367: 62516-63829
Sequence    

Annotation

kegg
ID tcc:TCM_033778
description LRR-family protein
nr
ID XP_012068299.1
description PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
swissprot
ID Q8W3M4
description Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1
trembl
ID A0A067LC88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16101 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009367_070 0.0 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
2 Hb_034713_010 0.0591404114 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
3 Hb_004705_060 0.0757677058 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
4 Hb_004112_080 0.0802980586 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
5 Hb_140627_040 0.088040341 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
6 Hb_011628_010 0.089741312 - - tonoplast intrinsic protein, putative [Ricinus communis]
7 Hb_000207_060 0.0910128372 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
8 Hb_002304_110 0.0912218207 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
9 Hb_001898_030 0.0938469988 - - protein kinase-coding resistance protein [Nicotiana repanda]
10 Hb_039075_010 0.0945419647 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
11 Hb_000333_140 0.0996908787 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
12 Hb_051212_020 0.1019963012 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
13 Hb_002228_120 0.1035518164 - - potassium channel beta, putative [Ricinus communis]
14 Hb_030360_010 0.1036902567 - - -
15 Hb_090210_010 0.1073083365 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
16 Hb_000813_020 0.1080117737 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
17 Hb_001635_140 0.1087692044 - - protein with unknown function [Ricinus communis]
18 Hb_153258_030 0.1119983596 - - hypothetical protein RCOM_0853150 [Ricinus communis]
19 Hb_004933_010 0.1143979181 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
20 Hb_015292_020 0.1144657264 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_009367_070 Hb_009367_070 Hb_034713_010 Hb_034713_010 Hb_009367_070--Hb_034713_010 Hb_004705_060 Hb_004705_060 Hb_009367_070--Hb_004705_060 Hb_004112_080 Hb_004112_080 Hb_009367_070--Hb_004112_080 Hb_140627_040 Hb_140627_040 Hb_009367_070--Hb_140627_040 Hb_011628_010 Hb_011628_010 Hb_009367_070--Hb_011628_010 Hb_000207_060 Hb_000207_060 Hb_009367_070--Hb_000207_060 Hb_034713_010--Hb_140627_040 Hb_002304_110 Hb_002304_110 Hb_034713_010--Hb_002304_110 Hb_034713_010--Hb_004705_060 Hb_001898_030 Hb_001898_030 Hb_034713_010--Hb_001898_030 Hb_034713_010--Hb_004112_080 Hb_085829_010 Hb_085829_010 Hb_004705_060--Hb_085829_010 Hb_000333_140 Hb_000333_140 Hb_004705_060--Hb_000333_140 Hb_004705_060--Hb_004112_080 Hb_004705_060--Hb_000207_060 Hb_030360_010 Hb_030360_010 Hb_004112_080--Hb_030360_010 Hb_039075_010 Hb_039075_010 Hb_004112_080--Hb_039075_010 Hb_004112_080--Hb_011628_010 Hb_003680_240 Hb_003680_240 Hb_140627_040--Hb_003680_240 Hb_051212_020 Hb_051212_020 Hb_140627_040--Hb_051212_020 Hb_140627_040--Hb_000207_060 Hb_009062_020 Hb_009062_020 Hb_140627_040--Hb_009062_020 Hb_011628_010--Hb_000333_140 Hb_001136_080 Hb_001136_080 Hb_011628_010--Hb_001136_080 Hb_002307_150 Hb_002307_150 Hb_011628_010--Hb_002307_150 Hb_005211_170 Hb_005211_170 Hb_011628_010--Hb_005211_170 Hb_011628_010--Hb_039075_010 Hb_003090_220 Hb_003090_220 Hb_000207_060--Hb_003090_220 Hb_001818_010 Hb_001818_010 Hb_000207_060--Hb_001818_010 Hb_000331_630 Hb_000331_630 Hb_000207_060--Hb_000331_630 Hb_000408_060 Hb_000408_060 Hb_000207_060--Hb_000408_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.410641 10.1618 93.2906 322.904 0.228556 0.32994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 13.0436 23.718

CAGE analysis