Hb_009382_020

Information

Type -
Description -
Location Contig9382: 16585-30714
Sequence    

Annotation

kegg
ID rcu:RCOM_0536310
description r3h domain containing protein, putative
nr
ID XP_012088643.1
description PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q15032
description R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3
trembl
ID A0A067JIX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00069 PE=4 SV=1
Gene Ontology
ID GO:0003676
description r3h domain containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63024: 21853-30843
cDNA
(Sanger)
(ID:Location)		 007_B20.ab1: 23465-30843 , 027_B07.ab1: 23527-30830 , 031_L06.ab1: 23514-30846 , 046_L06.ab1: 23463-30830

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009382_020 0.0 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
2 Hb_000300_620 0.0789792451 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
3 Hb_000138_040 0.0817131708 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
4 Hb_000483_350 0.0840876351 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
5 Hb_001157_030 0.0863834787 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
6 Hb_005062_070 0.0874369876 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
7 Hb_002890_280 0.0879230406 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
8 Hb_004046_010 0.0884316555 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
9 Hb_003861_080 0.0887908675 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
10 Hb_001635_100 0.0932166196 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
11 Hb_000784_090 0.0933858792 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
12 Hb_001030_120 0.0972606335 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
13 Hb_000853_110 0.09843635 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
14 Hb_000975_290 0.0984422972 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
15 Hb_002119_060 0.0985191129 transcription factor TF Family: Orphans histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
16 Hb_001047_020 0.0989281966 - - -
17 Hb_031089_010 0.0989490285 - - DNA binding protein, putative [Ricinus communis]
18 Hb_004221_010 0.0994739009 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
19 Hb_004223_130 0.099794777 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001584_330 0.1006769313 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]

Gene co-expression network

sample Hb_009382_020 Hb_009382_020 Hb_000300_620 Hb_000300_620 Hb_009382_020--Hb_000300_620 Hb_000138_040 Hb_000138_040 Hb_009382_020--Hb_000138_040 Hb_000483_350 Hb_000483_350 Hb_009382_020--Hb_000483_350 Hb_001157_030 Hb_001157_030 Hb_009382_020--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_009382_020--Hb_005062_070 Hb_002890_280 Hb_002890_280 Hb_009382_020--Hb_002890_280 Hb_001981_090 Hb_001981_090 Hb_000300_620--Hb_001981_090 Hb_001518_020 Hb_001518_020 Hb_000300_620--Hb_001518_020 Hb_000809_040 Hb_000809_040 Hb_000300_620--Hb_000809_040 Hb_004223_130 Hb_004223_130 Hb_000300_620--Hb_004223_130 Hb_010710_030 Hb_010710_030 Hb_000300_620--Hb_010710_030 Hb_001817_180 Hb_001817_180 Hb_000138_040--Hb_001817_180 Hb_000358_080 Hb_000358_080 Hb_000138_040--Hb_000358_080 Hb_000134_350 Hb_000134_350 Hb_000138_040--Hb_000134_350 Hb_029281_010 Hb_029281_010 Hb_000138_040--Hb_029281_010 Hb_001274_020 Hb_001274_020 Hb_000138_040--Hb_001274_020 Hb_004109_200 Hb_004109_200 Hb_000483_350--Hb_004109_200 Hb_000554_020 Hb_000554_020 Hb_000483_350--Hb_000554_020 Hb_004055_010 Hb_004055_010 Hb_000483_350--Hb_004055_010 Hb_004221_010 Hb_004221_010 Hb_000483_350--Hb_004221_010 Hb_000085_270 Hb_000085_270 Hb_000483_350--Hb_000085_270 Hb_001157_030--Hb_002890_280 Hb_003861_080 Hb_003861_080 Hb_001157_030--Hb_003861_080 Hb_001157_030--Hb_001981_090 Hb_000805_090 Hb_000805_090 Hb_001157_030--Hb_000805_090 Hb_006501_040 Hb_006501_040 Hb_001157_030--Hb_006501_040 Hb_001454_210 Hb_001454_210 Hb_005062_070--Hb_001454_210 Hb_001030_120 Hb_001030_120 Hb_005062_070--Hb_001030_120 Hb_004046_010 Hb_004046_010 Hb_005062_070--Hb_004046_010 Hb_000030_010 Hb_000030_010 Hb_005062_070--Hb_000030_010 Hb_000190_140 Hb_000190_140 Hb_005062_070--Hb_000190_140 Hb_009111_050 Hb_009111_050 Hb_005062_070--Hb_009111_050 Hb_000975_290 Hb_000975_290 Hb_002890_280--Hb_000975_290 Hb_007672_010 Hb_007672_010 Hb_002890_280--Hb_007672_010 Hb_002890_280--Hb_005062_070 Hb_000754_060 Hb_000754_060 Hb_002890_280--Hb_000754_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1596.5 497.313 94.2799 193.722 914.308 1089.71
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1111.6 876.31 1212.56 497.831 150.528

CAGE analysis