Hb_009384_020

Information

Type -
Description -
Location Contig9384: 17623-28043
Sequence    

Annotation

kegg
ID rcu:RCOM_1106730
description protein kinase, putative (EC:2.7.11.25 3.1.3.16)
nr
ID KDP25685.1
description hypothetical protein JCGZ_24168 [Jatropha curcas]
swissprot
ID Q5JJY4
description Protein kinase and PP2C-like domain-containing protein OS=Oryza sativa subsp. japonica GN=Os01g0541900 PE=2 SV=1
trembl
ID A0A067K0B7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24168 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein kinase and pp2c-like domain-containing protein isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63028: 26136-27962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009384_020 0.0 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
2 Hb_019516_100 0.0784562241 - - 40S ribosomal protein S14, putative [Ricinus communis]
3 Hb_000159_070 0.0818151502 - - JHL03K20.4 [Jatropha curcas]
4 Hb_007944_040 0.0854021974 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
5 Hb_001158_230 0.0871548694 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
6 Hb_012753_230 0.0913881616 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
7 Hb_000042_260 0.094889722 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
8 Hb_000172_420 0.095286302 - - 60S ribosomal protein L30, putative [Ricinus communis]
9 Hb_007575_070 0.0967236958 - - Histone H3.2 [Glycine soja]
10 Hb_000329_020 0.1004563016 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
11 Hb_026398_010 0.1032070992 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
12 Hb_000805_130 0.1032387044 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003549_020 0.1058249737 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000645_190 0.1061299593 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
15 Hb_002687_170 0.1067183801 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
16 Hb_002588_010 0.1072921038 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
17 Hb_000062_390 0.1075075924 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
18 Hb_007497_030 0.1081882247 - - mutt domain protein, putative [Ricinus communis]
19 Hb_001634_040 0.1085110803 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
20 Hb_076693_040 0.1109579724 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]

Gene co-expression network

sample Hb_009384_020 Hb_009384_020 Hb_019516_100 Hb_019516_100 Hb_009384_020--Hb_019516_100 Hb_000159_070 Hb_000159_070 Hb_009384_020--Hb_000159_070 Hb_007944_040 Hb_007944_040 Hb_009384_020--Hb_007944_040 Hb_001158_230 Hb_001158_230 Hb_009384_020--Hb_001158_230 Hb_012753_230 Hb_012753_230 Hb_009384_020--Hb_012753_230 Hb_000042_260 Hb_000042_260 Hb_009384_020--Hb_000042_260 Hb_019516_100--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_019516_100--Hb_002588_010 Hb_019516_100--Hb_001158_230 Hb_000062_390 Hb_000062_390 Hb_019516_100--Hb_000062_390 Hb_172221_010 Hb_172221_010 Hb_019516_100--Hb_172221_010 Hb_076693_040 Hb_076693_040 Hb_000159_070--Hb_076693_040 Hb_003988_040 Hb_003988_040 Hb_000159_070--Hb_003988_040 Hb_000159_070--Hb_019516_100 Hb_000172_420 Hb_000172_420 Hb_000159_070--Hb_000172_420 Hb_002897_080 Hb_002897_080 Hb_000159_070--Hb_002897_080 Hb_000111_340 Hb_000111_340 Hb_007944_040--Hb_000111_340 Hb_001268_140 Hb_001268_140 Hb_007944_040--Hb_001268_140 Hb_007575_070 Hb_007575_070 Hb_007944_040--Hb_007575_070 Hb_007944_040--Hb_002588_010 Hb_001300_270 Hb_001300_270 Hb_007944_040--Hb_001300_270 Hb_011311_010 Hb_011311_010 Hb_007944_040--Hb_011311_010 Hb_002687_170 Hb_002687_170 Hb_001158_230--Hb_002687_170 Hb_000933_160 Hb_000933_160 Hb_001158_230--Hb_000933_160 Hb_076626_010 Hb_076626_010 Hb_001158_230--Hb_076626_010 Hb_001158_230--Hb_007944_040 Hb_005181_030 Hb_005181_030 Hb_001158_230--Hb_005181_030 Hb_004052_020 Hb_004052_020 Hb_012753_230--Hb_004052_020 Hb_002259_070 Hb_002259_070 Hb_012753_230--Hb_002259_070 Hb_000948_210 Hb_000948_210 Hb_012753_230--Hb_000948_210 Hb_012753_230--Hb_019516_100 Hb_001538_120 Hb_001538_120 Hb_012753_230--Hb_001538_120 Hb_012753_230--Hb_007944_040 Hb_000042_260--Hb_172221_010 Hb_000042_260--Hb_002588_010 Hb_002909_130 Hb_002909_130 Hb_000042_260--Hb_002909_130 Hb_000329_020 Hb_000329_020 Hb_000042_260--Hb_000329_020 Hb_026398_010 Hb_026398_010 Hb_000042_260--Hb_026398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14521 0.403536 1.3617 0.749558 1.19357 1.9957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.29526 8.12548 1.70397 0.965613 0.873515

CAGE analysis