Hb_009393_050

Information

Type -
Description -
Location Contig9393: 22531-37693
Sequence    

Annotation

kegg
ID rcu:RCOM_0708010
description hypothetical protein
nr
ID XP_012077165.1
description PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID A0A067KQA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07575 PE=4 SV=1
Gene Ontology
ID GO:0016787
description protein root primordium defective 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63044: 22580-25467 , PASA_asmbl_63045: 22580-25467 , PASA_asmbl_63048: 25668-31978 , PASA_asmbl_63049: 32667-32831 , PASA_asmbl_63050: 32910-45742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_050 0.0 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
2 Hb_004934_090 0.0885091638 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
3 Hb_009393_080 0.0919824949 - - plant organelle RNA recognition domain protein [Medicago truncatula]
4 Hb_000284_210 0.0926860688 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001866_110 0.0944364487 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
6 Hb_007364_010 0.0945700781 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
7 Hb_000429_120 0.0953229543 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
8 Hb_011673_030 0.0986762818 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
9 Hb_001789_210 0.0994404059 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
10 Hb_005977_090 0.1003872122 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
11 Hb_001019_230 0.1013503447 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
12 Hb_000373_280 0.1021380103 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
13 Hb_005375_030 0.1022599498 - - DEAD/DEAH box helicase factory [Malus domestica]
14 Hb_000889_020 0.103067139 - - ribosome biogenesis protein brix, putative [Ricinus communis]
15 Hb_004619_020 0.1049883565 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_002030_030 0.1050282217 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
17 Hb_003994_240 0.1056573159 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
18 Hb_003728_030 0.1058111184 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
19 Hb_000703_080 0.1060210515 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
20 Hb_000599_110 0.1078219787 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009393_050 Hb_009393_050 Hb_004934_090 Hb_004934_090 Hb_009393_050--Hb_004934_090 Hb_009393_080 Hb_009393_080 Hb_009393_050--Hb_009393_080 Hb_000284_210 Hb_000284_210 Hb_009393_050--Hb_000284_210 Hb_001866_110 Hb_001866_110 Hb_009393_050--Hb_001866_110 Hb_007364_010 Hb_007364_010 Hb_009393_050--Hb_007364_010 Hb_000429_120 Hb_000429_120 Hb_009393_050--Hb_000429_120 Hb_002097_090 Hb_002097_090 Hb_004934_090--Hb_002097_090 Hb_004096_030 Hb_004096_030 Hb_004934_090--Hb_004096_030 Hb_005245_130 Hb_005245_130 Hb_004934_090--Hb_005245_130 Hb_002030_030 Hb_002030_030 Hb_004934_090--Hb_002030_030 Hb_000803_300 Hb_000803_300 Hb_004934_090--Hb_000803_300 Hb_003994_240 Hb_003994_240 Hb_004934_090--Hb_003994_240 Hb_003106_060 Hb_003106_060 Hb_009393_080--Hb_003106_060 Hb_004619_020 Hb_004619_020 Hb_009393_080--Hb_004619_020 Hb_000373_280 Hb_000373_280 Hb_009393_080--Hb_000373_280 Hb_063090_010 Hb_063090_010 Hb_009393_080--Hb_063090_010 Hb_011673_030 Hb_011673_030 Hb_009393_080--Hb_011673_030 Hb_000703_080 Hb_000703_080 Hb_000284_210--Hb_000703_080 Hb_000284_210--Hb_004934_090 Hb_000284_210--Hb_002097_090 Hb_000284_210--Hb_003994_240 Hb_009620_040 Hb_009620_040 Hb_000284_210--Hb_009620_040 Hb_002046_040 Hb_002046_040 Hb_000284_210--Hb_002046_040 Hb_001866_110--Hb_000429_120 Hb_005977_090 Hb_005977_090 Hb_001866_110--Hb_005977_090 Hb_000179_020 Hb_000179_020 Hb_001866_110--Hb_000179_020 Hb_002174_060 Hb_002174_060 Hb_001866_110--Hb_002174_060 Hb_003428_070 Hb_003428_070 Hb_001866_110--Hb_003428_070 Hb_000889_020 Hb_000889_020 Hb_001866_110--Hb_000889_020 Hb_000977_180 Hb_000977_180 Hb_007364_010--Hb_000977_180 Hb_001789_210 Hb_001789_210 Hb_007364_010--Hb_001789_210 Hb_007364_010--Hb_004934_090 Hb_007364_010--Hb_000703_080 Hb_010710_110 Hb_010710_110 Hb_007364_010--Hb_010710_110 Hb_025557_010 Hb_025557_010 Hb_007364_010--Hb_025557_010 Hb_002027_270 Hb_002027_270 Hb_000429_120--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_000429_120--Hb_004619_050 Hb_000046_440 Hb_000046_440 Hb_000429_120--Hb_000046_440 Hb_016898_010 Hb_016898_010 Hb_000429_120--Hb_016898_010 Hb_028487_110 Hb_028487_110 Hb_000429_120--Hb_028487_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.33587 5.96257 1.26773 2.32678 10.3694 14.9253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8987 7.79384 7.15903 5.04375 6.9078

CAGE analysis