Hb_009393_210

Information

Type -
Description -
Location Contig9393: 146509-148735
Sequence    

Annotation

kegg
ID rcu:RCOM_0708200
description transmembrane protein 14, putative
nr
ID XP_012077153.1
description PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
swissprot
ID Q94A32
description Protein FATTY ACID EXPORT 2, chloroplastic OS=Arabidopsis thaliana GN=FAX2 PE=2 SV=1
trembl
ID A0A067KCP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07567 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63064: 146478-148730 , PASA_asmbl_63065: 147799-148160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_210 0.0 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
2 Hb_001083_020 0.0773816065 - - -
3 Hb_002471_080 0.0819385328 - - oxidoreductase, putative [Ricinus communis]
4 Hb_001360_050 0.0824332761 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
5 Hb_000046_290 0.0835127345 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
6 Hb_004724_340 0.0874039085 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
7 Hb_001775_110 0.0894607486 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
8 Hb_001235_030 0.0914300612 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
9 Hb_005092_060 0.0929585051 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
10 Hb_011534_030 0.0955971712 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
11 Hb_114336_020 0.0977397202 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
12 Hb_027625_010 0.1009610316 - - PREDICTED: protein sym-1-like [Jatropha curcas]
13 Hb_000625_070 0.1035785862 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
14 Hb_011909_100 0.1078337469 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000817_030 0.1110350503 - - mak, putative [Ricinus communis]
16 Hb_000230_510 0.111573331 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
17 Hb_001014_230 0.112936292 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
18 Hb_020000_010 0.1138746331 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
19 Hb_124755_010 0.1141356043 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
20 Hb_000398_040 0.1143738405 - - Auxin response factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_009393_210 Hb_009393_210 Hb_001083_020 Hb_001083_020 Hb_009393_210--Hb_001083_020 Hb_002471_080 Hb_002471_080 Hb_009393_210--Hb_002471_080 Hb_001360_050 Hb_001360_050 Hb_009393_210--Hb_001360_050 Hb_000046_290 Hb_000046_290 Hb_009393_210--Hb_000046_290 Hb_004724_340 Hb_004724_340 Hb_009393_210--Hb_004724_340 Hb_001775_110 Hb_001775_110 Hb_009393_210--Hb_001775_110 Hb_001083_020--Hb_001775_110 Hb_000230_510 Hb_000230_510 Hb_001083_020--Hb_000230_510 Hb_017948_010 Hb_017948_010 Hb_001083_020--Hb_017948_010 Hb_012675_060 Hb_012675_060 Hb_001083_020--Hb_012675_060 Hb_001083_020--Hb_001360_050 Hb_002471_080--Hb_000046_290 Hb_002471_080--Hb_001360_050 Hb_001829_060 Hb_001829_060 Hb_002471_080--Hb_001829_060 Hb_124755_010 Hb_124755_010 Hb_002471_080--Hb_124755_010 Hb_000329_310 Hb_000329_310 Hb_002471_080--Hb_000329_310 Hb_000024_030 Hb_000024_030 Hb_002471_080--Hb_000024_030 Hb_001360_050--Hb_004724_340 Hb_001833_110 Hb_001833_110 Hb_001360_050--Hb_001833_110 Hb_005092_060 Hb_005092_060 Hb_001360_050--Hb_005092_060 Hb_002759_060 Hb_002759_060 Hb_001360_050--Hb_002759_060 Hb_001360_050--Hb_012675_060 Hb_027625_010 Hb_027625_010 Hb_000046_290--Hb_027625_010 Hb_000046_290--Hb_001775_110 Hb_000046_290--Hb_001360_050 Hb_008544_010 Hb_008544_010 Hb_000046_290--Hb_008544_010 Hb_001191_090 Hb_001191_090 Hb_000046_290--Hb_001191_090 Hb_010080_090 Hb_010080_090 Hb_004724_340--Hb_010080_090 Hb_004724_340--Hb_012675_060 Hb_004724_340--Hb_001833_110 Hb_000347_410 Hb_000347_410 Hb_004724_340--Hb_000347_410 Hb_004724_340--Hb_002471_080 Hb_000398_040 Hb_000398_040 Hb_001775_110--Hb_000398_040 Hb_001775_110--Hb_001360_050 Hb_011909_100 Hb_011909_100 Hb_001775_110--Hb_011909_100 Hb_114336_020 Hb_114336_020 Hb_001775_110--Hb_114336_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.6348 60.3291 34.2134 82.2212 105.736 167.996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
327.872 322.155 338.92 132.428 164.718

CAGE analysis