Hb_009398_010

Information

Type -
Description -
Location Contig9398: 14891-17505
Sequence    

Annotation

kegg
ID rcu:RCOM_0903700
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID KHN40868.1
description Putative pectate lyase 2 [Glycine soja]
swissprot
ID O65456
description Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1
trembl
ID A0A0B2S814
description Pectate lyase OS=Glycine soja GN=glysoja_015235 PE=3 SV=1
Gene Ontology
ID GO:0030570
description pectate lyase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009398_010 0.0 - - Putative pectate lyase 2 [Glycine soja]
2 Hb_002289_030 0.0013050964 - - PREDICTED: uncharacterized protein LOC103957017 [Pyrus x bretschneideri]
3 Hb_005204_060 0.0096411887 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_002094_060 0.0108571185 - - -
5 Hb_184964_010 0.011823438 - - -
6 Hb_004324_140 0.0125461381 - - PREDICTED: uncharacterized protein LOC105648358 [Jatropha curcas]
7 Hb_000905_020 0.0157151338 - - PREDICTED: cytochrome P450 93A2-like [Jatropha curcas]
8 Hb_000383_030 0.0252720668 - - -
9 Hb_005389_180 0.0272131026 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
10 Hb_000022_210 0.035228918 - - PREDICTED: uncharacterized protein LOC105638395 [Jatropha curcas]
11 Hb_009659_060 0.0549861708 - - cell wall invertase [Manihot esculenta]
12 Hb_002659_020 0.0570155229 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
13 Hb_004162_310 0.0820260872 - - tonoplast intrinsic protein, putative [Ricinus communis]
14 Hb_007320_050 0.0883492218 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
15 Hb_005316_010 0.0924846942 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_014749_010 0.095900691 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
17 Hb_002671_070 0.1176583484 - - hypothetical protein POPTR_0006s05220g, partial [Populus trichocarpa]
18 Hb_005946_130 0.1176583484 - - -
19 Hb_001048_120 0.1194863449 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_070810_010 0.1231733564 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_009398_010 Hb_009398_010 Hb_002289_030 Hb_002289_030 Hb_009398_010--Hb_002289_030 Hb_005204_060 Hb_005204_060 Hb_009398_010--Hb_005204_060 Hb_002094_060 Hb_002094_060 Hb_009398_010--Hb_002094_060 Hb_184964_010 Hb_184964_010 Hb_009398_010--Hb_184964_010 Hb_004324_140 Hb_004324_140 Hb_009398_010--Hb_004324_140 Hb_000905_020 Hb_000905_020 Hb_009398_010--Hb_000905_020 Hb_002289_030--Hb_005204_060 Hb_002289_030--Hb_002094_060 Hb_002289_030--Hb_184964_010 Hb_002289_030--Hb_004324_140 Hb_002289_030--Hb_000905_020 Hb_005204_060--Hb_002094_060 Hb_005204_060--Hb_184964_010 Hb_005204_060--Hb_004324_140 Hb_005204_060--Hb_000905_020 Hb_002094_060--Hb_184964_010 Hb_002094_060--Hb_004324_140 Hb_002094_060--Hb_000905_020 Hb_184964_010--Hb_004324_140 Hb_184964_010--Hb_000905_020 Hb_004324_140--Hb_000905_020 Hb_000383_030 Hb_000383_030 Hb_000905_020--Hb_000383_030 Hb_005389_180 Hb_005389_180 Hb_000905_020--Hb_005389_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0103319 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0188246 0

CAGE analysis