Hb_009404_010

Information

Type -
Description -
Location Contig9404: 18575-24172
Sequence    

Annotation

kegg
ID gmx:100813528
description casein kinase II subunit alpha-2-like
nr
ID XP_003517334.1
description PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
swissprot
ID Q08467
description Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=3
trembl
ID I1J9C8
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0004672
description casein kinase ii subunit alpha-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63160: 21769-22044 , PASA_asmbl_63161: 19538-23920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009404_010 0.0 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
2 Hb_001969_040 0.0845040275 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
3 Hb_004324_280 0.0857074004 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
4 Hb_000462_150 0.0879965894 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
5 Hb_005144_040 0.0901241747 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
6 Hb_002818_040 0.0910744545 - - tRNA synthetase-related family protein [Populus trichocarpa]
7 Hb_005147_110 0.0919955226 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
8 Hb_001936_050 0.0929720582 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
9 Hb_011496_010 0.0952726026 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
10 Hb_001498_030 0.0987268338 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
11 Hb_002928_060 0.1025825347 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
12 Hb_001673_120 0.1027365804 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
13 Hb_010866_040 0.1036461173 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
14 Hb_002270_010 0.1036564483 - - Chaperone protein dnaJ, putative [Ricinus communis]
15 Hb_011930_010 0.1044836677 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
16 Hb_018663_020 0.105128637 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
17 Hb_005314_010 0.1052383633 - - nucleotide binding protein, putative [Ricinus communis]
18 Hb_001623_550 0.1054686485 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
19 Hb_003656_160 0.1064249683 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
20 Hb_001366_040 0.1068294389 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_009404_010 Hb_009404_010 Hb_001969_040 Hb_001969_040 Hb_009404_010--Hb_001969_040 Hb_004324_280 Hb_004324_280 Hb_009404_010--Hb_004324_280 Hb_000462_150 Hb_000462_150 Hb_009404_010--Hb_000462_150 Hb_005144_040 Hb_005144_040 Hb_009404_010--Hb_005144_040 Hb_002818_040 Hb_002818_040 Hb_009404_010--Hb_002818_040 Hb_005147_110 Hb_005147_110 Hb_009404_010--Hb_005147_110 Hb_001969_040--Hb_000462_150 Hb_000186_280 Hb_000186_280 Hb_001969_040--Hb_000186_280 Hb_003384_030 Hb_003384_030 Hb_001969_040--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_001969_040--Hb_018663_020 Hb_001969_040--Hb_004324_280 Hb_001969_040--Hb_002818_040 Hb_004324_280--Hb_000186_280 Hb_004324_280--Hb_002818_040 Hb_000340_510 Hb_000340_510 Hb_004324_280--Hb_000340_510 Hb_004324_280--Hb_000462_150 Hb_001141_330 Hb_001141_330 Hb_004324_280--Hb_001141_330 Hb_000462_150--Hb_003384_030 Hb_000462_150--Hb_002818_040 Hb_000230_330 Hb_000230_330 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000001_180 Hb_000001_180 Hb_000462_150--Hb_000001_180 Hb_002270_010 Hb_002270_010 Hb_005144_040--Hb_002270_010 Hb_001498_030 Hb_001498_030 Hb_005144_040--Hb_001498_030 Hb_000076_290 Hb_000076_290 Hb_005144_040--Hb_000076_290 Hb_000640_210 Hb_000640_210 Hb_005144_040--Hb_000640_210 Hb_000174_200 Hb_000174_200 Hb_005144_040--Hb_000174_200 Hb_002818_040--Hb_000340_510 Hb_002818_040--Hb_003384_030 Hb_002818_040--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_008725_250 Hb_008725_250 Hb_005147_110--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005147_110--Hb_004310_060 Hb_001341_030 Hb_001341_030 Hb_005147_110--Hb_001341_030 Hb_005147_110--Hb_005914_230 Hb_005147_110--Hb_018663_020 Hb_000373_270 Hb_000373_270 Hb_005147_110--Hb_000373_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
247.689 71.1237 33.3858 26.3532 132.304 188.811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.2514 52.0692 114.985 37.1821 24.0495

CAGE analysis