Hb_009411_010

Information

Type -
Description -
Location Contig9411: 24435-39530
Sequence    

Annotation

kegg
ID rcu:RCOM_0142870
description hypothetical protein
nr
ID XP_012086227.1
description PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
swissprot
ID Q9QYI3
description DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=1 SV=2
trembl
ID A0A067K1G8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21128 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63184: 24785-25327 , PASA_asmbl_63185: 25499-25958 , PASA_asmbl_63186: 26145-27587 , PASA_asmbl_63187: 27793-29502 , PASA_asmbl_63188: 30382-39456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009411_010 0.0 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
2 Hb_003544_100 0.0471648807 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
3 Hb_000101_240 0.0505376734 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
4 Hb_003938_080 0.0513564388 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
5 Hb_001797_050 0.0618131396 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
6 Hb_048476_180 0.0625629355 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
7 Hb_000502_050 0.0641845387 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
8 Hb_001599_030 0.0658164564 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
9 Hb_000320_200 0.0665033071 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
10 Hb_003428_070 0.0669259934 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
11 Hb_000768_070 0.0672983668 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
12 Hb_000574_440 0.0691904226 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
13 Hb_003216_080 0.0699211858 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
14 Hb_000283_070 0.0701854316 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
15 Hb_004724_060 0.0702320093 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
16 Hb_003044_020 0.0702662619 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
17 Hb_000107_500 0.0712717496 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
18 Hb_000820_170 0.0725384469 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
19 Hb_000514_060 0.0739154347 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
20 Hb_000743_040 0.0740647055 - - ribosomal RNA methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009411_010 Hb_009411_010 Hb_003544_100 Hb_003544_100 Hb_009411_010--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_009411_010--Hb_000101_240 Hb_003938_080 Hb_003938_080 Hb_009411_010--Hb_003938_080 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_000502_050 Hb_000502_050 Hb_009411_010--Hb_000502_050 Hb_001599_030 Hb_001599_030 Hb_003544_100--Hb_001599_030 Hb_003544_100--Hb_003938_080 Hb_006915_060 Hb_006915_060 Hb_003544_100--Hb_006915_060 Hb_000320_200 Hb_000320_200 Hb_003544_100--Hb_000320_200 Hb_003216_080 Hb_003216_080 Hb_003544_100--Hb_003216_080 Hb_016898_010 Hb_016898_010 Hb_000101_240--Hb_016898_010 Hb_003428_070 Hb_003428_070 Hb_000101_240--Hb_003428_070 Hb_000084_120 Hb_000084_120 Hb_000101_240--Hb_000084_120 Hb_000101_240--Hb_048476_180 Hb_003362_070 Hb_003362_070 Hb_000101_240--Hb_003362_070 Hb_003938_080--Hb_003216_080 Hb_003938_080--Hb_000101_240 Hb_015884_030 Hb_015884_030 Hb_003938_080--Hb_015884_030 Hb_003938_080--Hb_000502_050 Hb_004724_060 Hb_004724_060 Hb_001797_050--Hb_004724_060 Hb_000207_390 Hb_000207_390 Hb_001797_050--Hb_000207_390 Hb_007163_090 Hb_007163_090 Hb_001797_050--Hb_007163_090 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_000803_190 Hb_000803_190 Hb_001797_050--Hb_000803_190 Hb_048476_180--Hb_003362_070 Hb_007307_020 Hb_007307_020 Hb_048476_180--Hb_007307_020 Hb_048476_180--Hb_016898_010 Hb_004935_030 Hb_004935_030 Hb_048476_180--Hb_004935_030 Hb_003785_040 Hb_003785_040 Hb_000502_050--Hb_003785_040 Hb_010222_050 Hb_010222_050 Hb_000502_050--Hb_010222_050 Hb_005993_050 Hb_005993_050 Hb_000502_050--Hb_005993_050 Hb_000574_440 Hb_000574_440 Hb_000502_050--Hb_000574_440 Hb_009503_030 Hb_009503_030 Hb_000502_050--Hb_009503_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9775 14.7428 7.78801 7.18127 21.8197 26.0434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7555 9.35136 14.7204 10.6329 12.6823

CAGE analysis