Hb_009411_030

Information

Type -
Description -
Location Contig9411: 50247-52799
Sequence    

Annotation

kegg
ID mdm:103415043
description bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like
nr
ID XP_008351630.1
description PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Malus domestica]
swissprot
ID F4JIK2
description Alpha carbonic anhydrase 4 OS=Arabidopsis thaliana GN=ACA4 PE=3 SV=1
trembl
ID M5W2Y5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009714mg PE=4 SV=1
Gene Ontology
ID GO:0004089
description alpha carbonic anhydrase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63192: 51818-52893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009411_030 0.0 - - PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Malus domestica]
2 Hb_001248_180 0.1264398645 - - -
3 Hb_010926_020 0.1462713496 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
4 Hb_057018_010 0.1496451884 - - hypothetical protein JCGZ_04004 [Jatropha curcas]
5 Hb_008196_010 0.1508771164 - - unnamed protein product [Coffea canephora]
6 Hb_081228_010 0.1533371842 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
7 Hb_045786_010 0.1567689869 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_000628_060 0.1569529129 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
9 Hb_010638_030 0.1595848101 - - oleosin1 [Plukenetia volubilis]
10 Hb_001006_130 0.1647467794 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
11 Hb_002894_020 0.1680191032 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
12 Hb_000224_020 0.1692739209 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
13 Hb_007125_020 0.170132865 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
14 Hb_072670_010 0.1716623322 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
15 Hb_005736_010 0.1727425309 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
16 Hb_002511_050 0.1732337851 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000860_030 0.1738958804 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004474_020 0.175143148 - - aldo-keto reductase, putative [Ricinus communis]
19 Hb_074100_010 0.1792631345 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
20 Hb_166700_010 0.1808730388 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]

Gene co-expression network

sample Hb_009411_030 Hb_009411_030 Hb_001248_180 Hb_001248_180 Hb_009411_030--Hb_001248_180 Hb_010926_020 Hb_010926_020 Hb_009411_030--Hb_010926_020 Hb_057018_010 Hb_057018_010 Hb_009411_030--Hb_057018_010 Hb_008196_010 Hb_008196_010 Hb_009411_030--Hb_008196_010 Hb_081228_010 Hb_081228_010 Hb_009411_030--Hb_081228_010 Hb_045786_010 Hb_045786_010 Hb_009411_030--Hb_045786_010 Hb_001248_180--Hb_081228_010 Hb_000628_060 Hb_000628_060 Hb_001248_180--Hb_000628_060 Hb_008066_020 Hb_008066_020 Hb_001248_180--Hb_008066_020 Hb_004474_020 Hb_004474_020 Hb_001248_180--Hb_004474_020 Hb_001248_180--Hb_010926_020 Hb_010926_020--Hb_057018_010 Hb_072670_010 Hb_072670_010 Hb_010926_020--Hb_072670_010 Hb_005736_010 Hb_005736_010 Hb_010926_020--Hb_005736_010 Hb_002511_050 Hb_002511_050 Hb_010926_020--Hb_002511_050 Hb_002894_020 Hb_002894_020 Hb_010926_020--Hb_002894_020 Hb_000224_020 Hb_000224_020 Hb_010926_020--Hb_000224_020 Hb_057018_010--Hb_072670_010 Hb_057018_010--Hb_005736_010 Hb_004652_040 Hb_004652_040 Hb_057018_010--Hb_004652_040 Hb_002014_120 Hb_002014_120 Hb_057018_010--Hb_002014_120 Hb_003337_010 Hb_003337_010 Hb_057018_010--Hb_003337_010 Hb_007125_020 Hb_007125_020 Hb_008196_010--Hb_007125_020 Hb_104362_020 Hb_104362_020 Hb_008196_010--Hb_104362_020 Hb_179367_010 Hb_179367_010 Hb_008196_010--Hb_179367_010 Hb_151027_010 Hb_151027_010 Hb_008196_010--Hb_151027_010 Hb_008196_010--Hb_002014_120 Hb_000174_130 Hb_000174_130 Hb_008196_010--Hb_000174_130 Hb_004899_380 Hb_004899_380 Hb_081228_010--Hb_004899_380 Hb_081228_010--Hb_000628_060 Hb_081228_010--Hb_004474_020 Hb_048987_020 Hb_048987_020 Hb_081228_010--Hb_048987_020 Hb_001006_130 Hb_001006_130 Hb_081228_010--Hb_001006_130 Hb_000579_210 Hb_000579_210 Hb_045786_010--Hb_000579_210 Hb_009851_040 Hb_009851_040 Hb_045786_010--Hb_009851_040 Hb_045786_010--Hb_000628_060 Hb_000628_100 Hb_000628_100 Hb_045786_010--Hb_000628_100 Hb_045786_010--Hb_008196_010 Hb_000270_790 Hb_000270_790 Hb_045786_010--Hb_000270_790
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.690661 0.389842 3.26549 0.0904371 0.0897928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.110011 0

CAGE analysis