Hb_009411_040

Information

Type -
Description -
Location Contig9411: 95279-98576
Sequence    

Annotation

kegg
ID fve:101296508
description putative ribonuclease H protein At1g65750-like
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009411_040 0.0 - - -
2 Hb_000684_100 0.1732643106 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
3 Hb_161901_020 0.1809429126 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
4 Hb_000011_050 0.1826150793 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
5 Hb_000212_300 0.1833118404 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
6 Hb_002194_050 0.1837387076 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
7 Hb_001369_030 0.1844703022 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
8 Hb_009771_060 0.1880266189 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
9 Hb_000086_430 0.1881602504 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
10 Hb_104920_010 0.1893812955 - - hypothetical protein VITISV_031859 [Vitis vinifera]
11 Hb_000363_350 0.190020837 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
12 Hb_001168_070 0.1915253862 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
13 Hb_000345_290 0.1916115762 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000421_230 0.192298005 - - retinal degeneration B beta, putative [Ricinus communis]
15 Hb_000445_210 0.1933725207 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
16 Hb_010407_160 0.1956731368 - - PREDICTED: chromatin modification-related protein MEAF6 isoform X1 [Jatropha curcas]
17 Hb_006210_020 0.1986639744 - - PREDICTED: calcium sensing receptor, chloroplastic [Jatropha curcas]
18 Hb_008120_040 0.1999091111 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
19 Hb_000979_060 0.2009188023 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
20 Hb_004125_060 0.2015130658 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009411_040 Hb_009411_040 Hb_000684_100 Hb_000684_100 Hb_009411_040--Hb_000684_100 Hb_161901_020 Hb_161901_020 Hb_009411_040--Hb_161901_020 Hb_000011_050 Hb_000011_050 Hb_009411_040--Hb_000011_050 Hb_000212_300 Hb_000212_300 Hb_009411_040--Hb_000212_300 Hb_002194_050 Hb_002194_050 Hb_009411_040--Hb_002194_050 Hb_001369_030 Hb_001369_030 Hb_009411_040--Hb_001369_030 Hb_000979_060 Hb_000979_060 Hb_000684_100--Hb_000979_060 Hb_004125_060 Hb_004125_060 Hb_000684_100--Hb_004125_060 Hb_000009_220 Hb_000009_220 Hb_000684_100--Hb_000009_220 Hb_000684_100--Hb_001369_030 Hb_000086_430 Hb_000086_430 Hb_000684_100--Hb_000086_430 Hb_000062_360 Hb_000062_360 Hb_000684_100--Hb_000062_360 Hb_000622_210 Hb_000622_210 Hb_161901_020--Hb_000622_210 Hb_033930_010 Hb_033930_010 Hb_161901_020--Hb_033930_010 Hb_001894_160 Hb_001894_160 Hb_161901_020--Hb_001894_160 Hb_005941_020 Hb_005941_020 Hb_161901_020--Hb_005941_020 Hb_000086_640 Hb_000086_640 Hb_161901_020--Hb_000086_640 Hb_000421_230 Hb_000421_230 Hb_161901_020--Hb_000421_230 Hb_000291_030 Hb_000291_030 Hb_000011_050--Hb_000291_030 Hb_000925_030 Hb_000925_030 Hb_000011_050--Hb_000925_030 Hb_000363_350 Hb_000363_350 Hb_000011_050--Hb_000363_350 Hb_000011_050--Hb_000979_060 Hb_174829_020 Hb_174829_020 Hb_000011_050--Hb_174829_020 Hb_002311_480 Hb_002311_480 Hb_000011_050--Hb_002311_480 Hb_000212_300--Hb_001369_030 Hb_000212_300--Hb_000062_360 Hb_027380_210 Hb_027380_210 Hb_000212_300--Hb_027380_210 Hb_011671_110 Hb_011671_110 Hb_000212_300--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_000212_300--Hb_015026_020 Hb_000212_300--Hb_005941_020 Hb_008375_030 Hb_008375_030 Hb_002194_050--Hb_008375_030 Hb_009771_060 Hb_009771_060 Hb_002194_050--Hb_009771_060 Hb_004129_090 Hb_004129_090 Hb_002194_050--Hb_004129_090 Hb_001776_210 Hb_001776_210 Hb_002194_050--Hb_001776_210 Hb_004994_080 Hb_004994_080 Hb_002194_050--Hb_004994_080 Hb_002876_300 Hb_002876_300 Hb_002194_050--Hb_002876_300 Hb_001369_030--Hb_000086_430 Hb_001369_030--Hb_000062_360 Hb_001009_120 Hb_001009_120 Hb_001369_030--Hb_001009_120 Hb_004267_060 Hb_004267_060 Hb_001369_030--Hb_004267_060 Hb_000836_540 Hb_000836_540 Hb_001369_030--Hb_000836_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.454872 1.58169 2.5062 0.34051 0.13324 0.246751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.943884 0.494514 0.143598 0.406228 0.635357

CAGE analysis