Hb_009421_020

Information

Type -
Description -
Location Contig9421: 28713-31543
Sequence    

Annotation

kegg
ID rcu:RCOM_1407570
description Caltractin, putative (EC:1.3.1.74)
nr
ID XP_012079225.1
description PREDICTED: caltractin-like [Jatropha curcas]
swissprot
ID P41210
description Caltractin OS=Atriplex nummularia PE=2 SV=1
trembl
ID A0A067K740
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12388 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63199: 28715-31599
cDNA
(Sanger)
(ID:Location)		 031_K06.ab1: 28716-31442 , 040_C07.ab1: 28717-31525 , 047_A11.ab1: 28718-31470

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009421_020 0.0 - - PREDICTED: caltractin-like [Jatropha curcas]
2 Hb_000365_120 0.0612822671 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
3 Hb_000866_010 0.0661062389 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007632_030 0.0673276841 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
5 Hb_001512_060 0.0690228419 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
6 Hb_000362_200 0.0690578612 - - exonuclease family protein [Populus trichocarpa]
7 Hb_000329_320 0.0712787087 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
8 Hb_004093_090 0.0723091563 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
9 Hb_002530_030 0.0723178161 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
10 Hb_001305_010 0.0733145017 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
11 Hb_005697_060 0.0735783129 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
12 Hb_000883_020 0.0743840073 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
13 Hb_001012_010 0.0744899235 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
14 Hb_000260_100 0.0754981264 - - conserved hypothetical protein [Ricinus communis]
15 Hb_156973_010 0.0780148625 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000236_240 0.0793914334 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
17 Hb_000230_560 0.080106944 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
18 Hb_000010_400 0.0809664174 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
19 Hb_000771_120 0.0809841498 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
20 Hb_000403_050 0.0810354817 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_009421_020 Hb_009421_020 Hb_000365_120 Hb_000365_120 Hb_009421_020--Hb_000365_120 Hb_000866_010 Hb_000866_010 Hb_009421_020--Hb_000866_010 Hb_007632_030 Hb_007632_030 Hb_009421_020--Hb_007632_030 Hb_001512_060 Hb_001512_060 Hb_009421_020--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_009421_020--Hb_000362_200 Hb_000329_320 Hb_000329_320 Hb_009421_020--Hb_000329_320 Hb_000365_120--Hb_007632_030 Hb_001390_110 Hb_001390_110 Hb_000365_120--Hb_001390_110 Hb_002141_030 Hb_002141_030 Hb_000365_120--Hb_002141_030 Hb_156973_010 Hb_156973_010 Hb_000365_120--Hb_156973_010 Hb_005697_060 Hb_005697_060 Hb_000365_120--Hb_005697_060 Hb_006817_010 Hb_006817_010 Hb_000866_010--Hb_006817_010 Hb_000053_110 Hb_000053_110 Hb_000866_010--Hb_000053_110 Hb_007389_010 Hb_007389_010 Hb_000866_010--Hb_007389_010 Hb_000260_100 Hb_000260_100 Hb_000866_010--Hb_000260_100 Hb_002235_250 Hb_002235_250 Hb_000866_010--Hb_002235_250 Hb_007632_030--Hb_156973_010 Hb_004841_010 Hb_004841_010 Hb_007632_030--Hb_004841_010 Hb_000120_790 Hb_000120_790 Hb_007632_030--Hb_000120_790 Hb_023386_020 Hb_023386_020 Hb_007632_030--Hb_023386_020 Hb_010921_010 Hb_010921_010 Hb_001512_060--Hb_010921_010 Hb_001512_060--Hb_000362_200 Hb_001534_120 Hb_001534_120 Hb_001512_060--Hb_001534_120 Hb_007477_070 Hb_007477_070 Hb_001512_060--Hb_007477_070 Hb_007154_020 Hb_007154_020 Hb_001512_060--Hb_007154_020 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020 Hb_000362_200--Hb_001534_120 Hb_005186_050 Hb_005186_050 Hb_000362_200--Hb_005186_050 Hb_004093_090 Hb_004093_090 Hb_000362_200--Hb_004093_090 Hb_000362_200--Hb_007477_070 Hb_032264_070 Hb_032264_070 Hb_000329_320--Hb_032264_070 Hb_005269_070 Hb_005269_070 Hb_000329_320--Hb_005269_070 Hb_002490_020 Hb_002490_020 Hb_000329_320--Hb_002490_020 Hb_000917_060 Hb_000917_060 Hb_000329_320--Hb_000917_060 Hb_000883_020 Hb_000883_020 Hb_000329_320--Hb_000883_020 Hb_000866_260 Hb_000866_260 Hb_000329_320--Hb_000866_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
309.229 123.646 225.894 103.147 239.627 231.417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
217.358 285.452 210.381 139.91 154.661

CAGE analysis